LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Eupl10g00245	ATGACGACTTTCAGATTTCAGCAGTTCCAGGTGGTCCTCCCTTCCGAAACAAACGAGCACCCAAATATTTACAGGACGAAACTCTGGGCCATGAACGAGGTTTGCGCCAAATCGAAGTTCTGGAAGCTCAAGAAAGTCGAGAGGAGCAATGGTCAAGTGCTCGCTATCAATGAGGTCCACTTTACAAGCTATATAAACTCAGGTATGGATTCACCAAGTCCTCCCAAAAGCAGCAAAATGGGTGTCAACACCAAATCAACAACAGATAGGTATGCAGTGGTTACAGGTGCAAACAAGGGTATCGGGCTCGAAATCGTTCGACAGCTGGCGTTTGAAGGTGTAACGGTCGTGTCAACAGCTAGAGATGAGAAGAGAGGGATTGATGCGTCGTCGTCCCTGATCAACTCAGGGTTGACGAATGTAGTTTTCCACCAGCTTGATGTTCGAGATGAGGCTAGTGTTGAGTCGTTAGCCAGATTTGTTCAAACTCAGTTTGGAAGACTGGATATCTTGGTAAACAATGCTGGAGCATCTGGAGTCATAGTTGATGAAGAAGGTCTGAAGGCCATGAACATTGATCCTGTATCTTGGCTTTCTGGCAAGGCCACAAACTTGGTGCAAGGAGTGATTCGACAAAATTATGAGAAGGCAGAGGAATGCATCGACACGAACTACTACGGCTGCAAAAGGGTGACAGAAGCTCTTTTGCCTCTTCTACAGCACTCTACATCAGGAGCAAGGATTGTAAATGTGTCTTCTCTTAGATCAGAGCTCAAGAGGATTCCCAGTGAACAGACGAGAAATGAATTGGGGGACCTAGGCATCCTCACAGAAGAGAAAGTGGACAGGTTACTCCAAAGATTCCTACATGATTTTAAGCAAGGGAAGCTTGAAGACAACGGATGGTCCCTAAAGCTGCCTGCTTATAGCATCTCCAAAGCCACGCTTAACGCCTACACTAGAGTTCTTGCCAAGAGGTACCCAGACATGTACATAAACTGTGTCCATCCTGGCTACGTCAATACCGATATAAATTGGCATACAGGGACAATGACTGTCGAAGAGGGAGCTAGAGGTCCTGTTATGTTGGCTTTGCTACCTAATGGGGGGCCCTCAGGGCACTATTTTGATCAGACAGAAATGGCGGAGTTTTGA	1155	0.4649	MTTFRFQQFQVVLPSETNEHPNIYRTKLWAMNEVCAKSKFWKLKKVERSNGQVLAINEVHFTSYINSGMDSPSPPKSSKMGVNTKSTTDRYAVVTGANKGIGLEIVRQLAFEGVTVVSTARDEKRGIDASSSLINSGLTNVVFHQLDVRDEASVESLARFVQTQFGRLDILVNNAGASGVIVDEEGLKAMNIDPVSWLSGKATNLVQGVIRQNYEKAEECIDTNYYGCKRVTEALLPLLQHSTSGARIVNVSSLRSELKRIPSEQTRNELGDLGILTEEKVDRLLQRFLHDFKQGKLEDNGWSLKLPAYSISKATLNAYTRVLAKRYPDMYINCVHPGYVNTDINWHTGTMTVEEGARGPVMLALLPNGGPSGHYFDQTEMAEF*	385

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Eupl10g00245	384	Gene3D	-	80	384	-	-
	Eupl10g00245	384	SUPERFAMILY	NAD(P)-binding Rossmann-fold domains	87	367	IPR036291	-
	Eupl10g00245	384	PRINTS	Short-chain dehydrogenase/reductase (SDR) superfamily signature	246	254	IPR002347	-
	Eupl10g00245	384	PRINTS	Short-chain dehydrogenase/reductase (SDR) superfamily signature	309	328	IPR002347	-
	Eupl10g00245	384	PRINTS	Short-chain dehydrogenase/reductase (SDR) superfamily signature	166	177	IPR002347	-
	Eupl10g00245	384	Pfam	Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A	11	60	IPR023573	GO:0003735\|GO:0005840\|GO:0006412
	Eupl10g00245	384	PRINTS	Glucose/ribitol dehydrogenase family signature	240	256	IPR002347	-
	Eupl10g00245	384	PRINTS	Glucose/ribitol dehydrogenase family signature	328	345	IPR002347	-
	Eupl10g00245	384	PRINTS	Glucose/ribitol dehydrogenase family signature	91	108	IPR002347	-
	Eupl10g00245	384	PRINTS	Glucose/ribitol dehydrogenase family signature	166	177	IPR002347	-
	Eupl10g00245	384	PRINTS	Glucose/ribitol dehydrogenase family signature	309	328	IPR002347	-
	Eupl10g00245	384	Pfam	short chain dehydrogenase	91	257	IPR002347	-
	Eupl10g00245	384	Hamap	50S ribosomal protein L18Ae [rpl18a].	6	62	IPR028877	-
	Eupl10g00245	384	CDD	carb_red_PTCR-like_SDR_c	90	377	IPR045313	GO:0016616
	Eupl10g00245	384	Gene3D	-	1	63	-	-
	Eupl10g00245	384	PANTHER	(+)-NEOMENTHOL DEHYDROGENASE	90	381	-	-
	Eupl10g00245	384	FunFam	(+)-neomenthol dehydrogenase	85	384	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Eupl10g00245	Eupl-Chr10	16091701	16096383	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Eupl10g00245	1	59	Cytoplasmic Ribosomal Protein Gene Family	AT3G14600	66.667	5.38e-22	90.5

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Eupl10g00245	K15095		-	nnu:104593476	499.975