Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl10g00184 ATGGAGCTGTCGAATCCTACAAAACCCTCTGCCGTGGAGGAAGAAGACGACGACGGTTACGTGGAGTACATACCCGTGAAGAAGCGGAGAGCCATGGAAGCACAGAAAATCCTTCAACGAAAGGGTAAATCCTCGGCTCTCGAAGACGACCCCGAGCGTTCTAAGCTCGCCGAAGCGAAGCCCAGCCTCCTCGTCAAGGCGTCGCAGCTGAAGCGTGACCTCCCAGAGATCAGCCCCACCGAGCAGATCGTTCAACAAGAGAAAGAGATGATCGAACATCTCTCCGACCGCAAAACTCTAATGTCCGTCCGCGAGCTAGCTAAAGGAATTACCTACTCGGAGCCGCTAGTGACCGGATGGAAGCCGCCGCTGCCGATCCGACGGATGTCGTCGAAAGAATGCGAGTCAATTCGTAAGCAGTGGCACATACTCGTGGACGGCGATGAAGTTCCCCCGCCAATCAAGAATTTCAAGGATATGCGATTGCCGGACCCGATTCTGAAGAAGTTGAAGGCTAAAGGGATTGTGCAGCCGACGCCCATTCAGGTGCAGGGGCTTCCGGTGATCTTGGCAGGGAGGGACATGATTGGTATTGCGTTCACGGGTTCGGGAAAAACATTGGTTTTTGTGTTGCCATTAATTATGGTGGCGTTGCAGGAAGAGGTGATGATGCCGATTGTTCCTGGTGAAGGGCCATTTGGTTTGGTGATTTGTCCTTCGAGAGAGCTTGCTAGGCAGACGTATGAGGTTGTTGAGGAGTTTTTGATCCCTTTGAAGGAGAATGGGTACCCAGAGTTGAGGCCGTTGCTCTGTATTGGTGGTGTTGATATGCGGTCGCAGCTGGAGATTGTGAAGAAGGGTGTGCATATTGTTGTCGCCACGCCAGGGAGGTTGAAGGACATGCTTGCGAAGAAGAAGATGAGTCTTGATAACTGCAGGTATTTGACATTGGATGAGGCAGATAGGTTGGTTGACTTGGGTTTTGAAGATGACATTAGGGAAGTCTTTGACCATTTTAAAGCTCAGAGACAAACGCTTCTATTCTCTGCCACCATGCCCACAAAGATCCAGAACTTCGCTAGAAGTGCGCTGGTGAAACCTGTGACTGTCAACGTGGGACGGGCTGGAGCTGCGAATCTGGATGTGATACAAGAAGTTGAGTATGTGAAGCAAGAGGCGAAGATTGTCTACCTTCTCGAGTGCCTGCAAAAGACCCCACCTCCCGTTCTGATATTTTGTGAGAACAAAGCTGACGTGGATGATATCCACGAATATCTTCTGCTGAAAGGAGTTGAGGCAGTAGCTATACATGGAGGCAAGGATCAGGAAGAGAGAGAGTATGCCATTTCATCATTCAAAGCAGGGAAAAAGGATGTTTTGGTTGCGACGGATGTCGCCTCAAAAGGGCTGGATTTTCCTGATATTCAGCATGTTATCAACTATGACATGCCTGCAGAAATTGAGAACTATGTGCACAGGATTGGACGAACCGGAAGGTGTGGAAAGACGGGCATAGCGACAACTTTTATAAACAAAAACCAGAGTGAGACCACTCTTCTCGATCTGAAGCACCTCTTGCAAGAGGCAAAGCAGAGGATCCCTCCTGTGCTTGCGGAACTCAATGATCCAATGGAGGATGTGGATGCCATTACAAATGCCAGTGGGGTGAAGGGTTGTGCTTATTGTGGTGGTCTCGGGCATCGTATCCGTGACTGTCCCAAGCTGGAGCATCAGAAGAGCATGGCTATTGCTAGTTCAAGAAGAGACTATTTCGGGTCAGGGGGCTATCGAGGGGAAATCTGA 1803 0.5003 MELSNPTKPSAVEEEDDDGYVEYIPVKKRRAMEAQKILQRKGKSSALEDDPERSKLAEAKPSLLVKASQLKRDLPEISPTEQIVQQEKEMIEHLSDRKTLMSVRELAKGITYSEPLVTGWKPPLPIRRMSSKECESIRKQWHILVDGDEVPPPIKNFKDMRLPDPILKKLKAKGIVQPTPIQVQGLPVILAGRDMIGIAFTGSGKTLVFVLPLIMVALQEEVMMPIVPGEGPFGLVICPSRELARQTYEVVEEFLIPLKENGYPELRPLLCIGGVDMRSQLEIVKKGVHIVVATPGRLKDMLAKKKMSLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELNDPMEDVDAITNASGVKGCAYCGGLGHRIRDCPKLEHQKSMAIASSRRDYFGSGGYRGEI* 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl10g00184 600 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 381 541 IPR001650 -
Eupl10g00184 600 SMART helicmild6 420 501 IPR001650 -
Eupl10g00184 600 Gene3D - 124 374 IPR027417 -
Eupl10g00184 600 Pfam Zinc knuckle 558 574 IPR001878 GO:0003676|GO:0008270
Eupl10g00184 600 CDD SF2_C_DEAD 382 510 - -
Eupl10g00184 600 ProSiteProfiles Zinc finger CCHC-type profile. 559 574 IPR001878 GO:0003676|GO:0008270
Eupl10g00184 600 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 155 183 IPR014014 GO:0003724
Eupl10g00184 600 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 186 370 IPR014001 -
Eupl10g00184 600 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 124 540 - -
Eupl10g00184 600 SMART ultradead3 174 385 IPR014001 -
Eupl10g00184 600 FunFam Probable ATP-dependent RNA helicase DDX41 122 371 - -
Eupl10g00184 600 SMART c2hcfinal6 558 574 IPR001878 GO:0003676|GO:0008270
Eupl10g00184 600 FunFam Probable ATP-dependent RNA helicase DDX41 380 542 - -
Eupl10g00184 600 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 231 516 IPR027417 -
Eupl10g00184 600 SUPERFAMILY Retrovirus zinc finger-like domains 558 579 IPR036875 GO:0003676|GO:0008270
Eupl10g00184 600 CDD DEADc_DDX41 166 371 IPR044113 GO:0000398|GO:0003724|GO:0005524
Eupl10g00184 600 Coils Coil 512 532 - -
Eupl10g00184 600 Pfam DEAD/DEAH box helicase 179 358 IPR011545 GO:0003676|GO:0005524
Eupl10g00184 600 Gene3D - 380 542 IPR027417 -
Eupl10g00184 600 Pfam Helicase conserved C-terminal domain 394 501 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl10g00184 Eupl-Chr10 14202385 14218819 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl10g00184 127 536 Eukaryotic Initiation Factors Gene Family AT3G13920 30.024 8.54e-57 195
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl10g00184 K13116 - ming:122064546 1130.93