Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl10g00165 ATGAATTCGTTCTCTGTTACACGAAAGAAAACCCCTTTTCAGAAACACAGAGAGGAGGAAGAAGCCAAGAAGAAGAGAGTAGAGGATGAAACTGCTCGCCTTTATGCAGAATTTGTAGAGTCGTTTCAAGGAGATAATGCGCCAGGGTCAAAGACTTTTGTTAGAGGAGGAACTATTAATCCCAATGAAAAGCAGAAGCCTGATTTAGAAGGGCACATTAATAAAAACATGGGCCTTTTTATTCATTCGACGATGGCAGGTGGAAATTCTAAAGATGGGGTATCTGTTCCAAAGAAGGGAAGTAGATATGTTCCATCTTTCATACCACCTCCTTTGGCAACCAAAGGAAAAGAACTTGAGAAGAAGGAGGAGAGGCCAAAGGAGAAGGAAAAAGGTAAGTCACGAAACATAGATCATTTTATGGAAGAACTGAAGCTTGAGCAGGAGCTGAGGGAGAGGCGCAATCAAGAGCGTGAACAGTGGCGTGAGGGACGTCATAATGAAAATTCTGCTCCACTTAGCCGATTTGATGAGCTTCCAGATGATTTTGATCCAAGTGGGAAGCTTCCTGGATCATTTGATGACGGGGACCCACAAACTACAAATCTATATGTTGGAAATCTCTCACCACAGGTGGATGAGAATTTTCTTTTGAGGACTTTTGGAAGATTCGGACCTATCGCTAGTGTGAAGATAATGTGGCCTCGGACAGAGGAGGAAAAGAGGCGGCAAAGGAACTGTGGATTTGTTGCTTTCATGAATAGAGCAGATGGACAGGCTGCAAAGGATGAAATGCAAGGGGTTGTTGTTTATGAGTACGAGTTGAAGATAGGATGGGGTAAGTCTGTCTCTCTTCCATCGCAAGCACTACCTGCTCCTCCACCAGGACAGATGGCCATCAGGAGTAAGGAGGGTGGCACTGTGATCCTGTCTGGTCCTGATGGCCAACTAGTAACTTCTGTGACGAATCAGAGCTCTGAGCTGGTTCTTACTCCCAATGTTCCTGATATAATGGTTGTTCCGCCTGAGGATGATCATCTCTGCCATGTAATTGATACGATGGCTCTGCATGTTCTTGATGGTGGATGTGCTTTTGAACAAGCTATAATGGAGAGAGGTCGTGGAAAATCACTTTTTAACTTCTTGTTTGAGCTTGGGTCGAAGGAGCATACTTACTATGTGTGGAGGTTGTACTCCTTTGCTCAGGGTGATACTCTTCAGAGGTGGCGAACAGAGCCTTTCATCATGATAACTGGGAGTGGGAGATGGCTGCCACCTCCTCTGCCATCTATCAAGAGCCCCGAGCACGAGAAGGAGTCTGATACCACATTTGCAGCGGGAAGAAGCAGACGTGTAGAACTGGAACGAACGTTAACAGATCCACAGAGAGATGAGTTTGAGGATATGCTGCGGGGTTTGACATTGGAGAGGAGCCAGATAAAGGAAGCTATGGGCTTTGCTTTAGATAATTCTGATGCAGCTGGGGAGATAGTTGAGGTTCTTACTGAATCTTTGACGCTTAAAGAAACCCCCATACCAACTAAAGTTGCAAGGCTCATGCTTGTCTCCGACATCCTTCATAACAGTAGTGCTCCTGTAAAGAATGCATCTGCATACCGTACTAAATTTGAAGCCACATTACCTGATATAATGGAGAGCTTCAATGACTTGTATCGTAGTATCACGGGAAGGATCACTGCCGAGGCCCTCAAGGAACGAGTTTCAAAGGTTCTCCAAGTATGGGCAGACTGGTTTCTCTTTTCAGATGCATATGTGAATGGACTGCGAGCTACTTTTCTTCGATCTGGGAACTCTGGTGTGATTCCTTTCCATTCTATATGTGGGGATGCTACAGAAATTGAAAACAAAACCAGCTCCGAAGATATGGCTGAGGGTGGTAAGCTCAACCAAGATGCAGCATTGACAATGGGGAAGGGAGCAGCCATGCAGGAGTTGTTGAACCTTCCCCTTGCTGAGTTGGAAAGACGTTGCAGACACAATGGGCTATCGCTTGTTGGGGGTAGGGAAATGATGGTTGCAAGGTTGCTCAGTCTGGAAGAGGCAGAACGACAGAGGGGGCATGACCGAGATGATGACATTAAATATGGACGGAGCCATTCAAACTCAGGTAGATATTCAAAGGTTGACAGTAGCTGGCATGCAAATAATGGTGGTCGTAGAGAGATCAACCTCGGGATGGAACCGGCGGGGTCCCCAGGATGGAATAACTATGGGGAGGATGGGATGCGATTGCAAGGCAAAGGTTCTGCACCTTTGGCCTCAACTCTTCCTATTCCACAGCCTGAACTGAAAGCCTTTTCAAAGAAGGGAAAATCTGATCCCATTTTGCCAGTCTCTAAATGGGCTAGAGAGGATGACGGCAGTGATGATGAAGATAAGAGAAGTGCTCAGGACCTGGGGTTAAGCTACTCATCTTCTGGAAGTGAAAATGCTGGTGATGGTTCTGATAAGGCTGATGAAATGGATGTTGCAGCAGATAGAAGCATTTCATCTCACCCTGACAGTGACATGAATGAAGAACAGAGGAAAAAGCTTAGGCAGCTGGAGGTATCTGTGATCGAATACCGCGAATATCTTGAAGAGCGGGGAATCAGAAGTTCTGAGGAAATTGAGAGGAAGGTCGCAATCCACCGGAGACGGCTAGAATCCGAATTTGGATTATCAGATATTAACAAAGATGTTTCGGGGGACAGTGATCACTTATCTCAGAGGTCGTCTCTGGAGAGGAAGGACAGACGAGGCGATTTCCGTGATTCCTCAAGGAAACGACATCGCAGCCAGAGTAGAAGCCGGAGCCCCCAACACAAGTCATCAACCAAAGACAGGGCAAGGGAAAATGACGTGGACAGGGATCGGGACAGGTACCGTGATAGAGACAGAATTCATGAGCTGGAAAGTGAAAGGAGAAGGGATCGTGAGAAGAGTGGAAGCAAAGAGAGGGACGATCATGATAGGGATAAAGGCAGAGAGGACAGGGATAGGAGGAAAAAGGGGAAATGA 3021 0.4638 MNSFSVTRKKTPFQKHREEEEAKKKRVEDETARLYAEFVESFQGDNAPGSKTFVRGGTINPNEKQKPDLEGHINKNMGLFIHSTMAGGNSKDGVSVPKKGSRYVPSFIPPPLATKGKELEKKEERPKEKEKGKSRNIDHFMEELKLEQELRERRNQEREQWREGRHNENSAPLSRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEEKRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSVSLPSQALPAPPPGQMAIRSKEGGTVILSGPDGQLVTSVTNQSSELVLTPNVPDIMVVPPEDDHLCHVIDTMALHVLDGGCAFEQAIMERGRGKSLFNFLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWLPPPLPSIKSPEHEKESDTTFAAGRSRRVELERTLTDPQRDEFEDMLRGLTLERSQIKEAMGFALDNSDAAGEIVEVLTESLTLKETPIPTKVARLMLVSDILHNSSAPVKNASAYRTKFEATLPDIMESFNDLYRSITGRITAEALKERVSKVLQVWADWFLFSDAYVNGLRATFLRSGNSGVIPFHSICGDATEIENKTSSEDMAEGGKLNQDAALTMGKGAAMQELLNLPLAELERRCRHNGLSLVGGREMMVARLLSLEEAERQRGHDRDDDIKYGRSHSNSGRYSKVDSSWHANNGGRREINLGMEPAGSPGWNNYGEDGMRLQGKGSAPLASTLPIPQPELKAFSKKGKSDPILPVSKWAREDDGSDDEDKRSAQDLGLSYSSSGSENAGDGSDKADEMDVAADRSISSHPDSDMNEEQRKKLRQLEVSVIEYREYLEERGIRSSEEIERKVAIHRRRLESEFGLSDINKDVSGDSDHLSQRSSLERKDRRGDFRDSSRKRHRSQSRSRSPQHKSSTKDRARENDVDRDRDRYRDRDRIHELESERRRDREKSGSKERDDHDRDKGREDRDRRKKGK* 1007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl10g00165 1006 Gene3D - 459 605 IPR008942 -
Eupl10g00165 1006 Gene3D Surp module 336 405 IPR035967 GO:0003723|GO:0006396
Eupl10g00165 1006 MobiDBLite consensus disorder prediction 87 193 - -
Eupl10g00165 1006 Gene3D - 844 895 - -
Eupl10g00165 1006 MobiDBLite consensus disorder prediction 805 819 - -
Eupl10g00165 1006 Pfam cwf21 domain 846 891 IPR013170 -
Eupl10g00165 1006 MobiDBLite consensus disorder prediction 890 929 - -
Eupl10g00165 1006 SUPERFAMILY Surp module (SWAP domain) 326 405 IPR035967 GO:0003723|GO:0006396
Eupl10g00165 1006 MobiDBLite consensus disorder prediction 115 184 - -
Eupl10g00165 1006 CDD cwf21_RRC1-like 844 893 IPR047491 -
Eupl10g00165 1006 MobiDBLite consensus disorder prediction 820 850 - -
Eupl10g00165 1006 SUPERFAMILY RNA-binding domain, RBD 194 297 IPR035979 GO:0003676
Eupl10g00165 1006 MobiDBLite consensus disorder prediction 46 69 - -
Eupl10g00165 1006 MobiDBLite consensus disorder prediction 890 1006 - -
Eupl10g00165 1006 MobiDBLite consensus disorder prediction 688 705 - -
Eupl10g00165 1006 MobiDBLite consensus disorder prediction 706 724 - -
Eupl10g00165 1006 Pfam Surp module 349 400 IPR000061 GO:0003723|GO:0006396
Eupl10g00165 1006 SMART 558neu5 465 600 IPR006569 -
Eupl10g00165 1006 MobiDBLite consensus disorder prediction 1 28 - -
Eupl10g00165 1006 Gene3D - 113 285 IPR012677 -
Eupl10g00165 1006 Pfam CID domain 465 593 IPR006569 -
Eupl10g00165 1006 SMART rrm1_1 202 278 IPR000504 GO:0003723
Eupl10g00165 1006 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 201 282 IPR000504 GO:0003723
Eupl10g00165 1006 Coils Coil 17 37 - -
Eupl10g00165 1006 MobiDBLite consensus disorder prediction 785 804 - -
Eupl10g00165 1006 SMART surpneu2 348 402 IPR000061 GO:0003723|GO:0006396
Eupl10g00165 1006 MobiDBLite consensus disorder prediction 11 28 - -
Eupl10g00165 1006 SUPERFAMILY ENTH/VHS domain 461 600 IPR008942 -
Eupl10g00165 1006 MobiDBLite consensus disorder prediction 688 850 - -
Eupl10g00165 1006 MobiDBLite consensus disorder prediction 941 1000 - -
Eupl10g00165 1006 ProSiteProfiles CID domain profile. 458 603 IPR006569 -
Eupl10g00165 1006 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 203 275 IPR000504 GO:0003723
Eupl10g00165 1006 CDD RRM_SR140 200 283 IPR035009 -
Eupl10g00165 1006 PANTHER RNA PROCESSING PROTEIN LD23810P 1 938 - -
Eupl10g00165 1006 SMART cwf21_2 844 893 IPR013170 -
Eupl10g00165 1006 ProSiteProfiles SURP motif repeat profile. 350 393 IPR000061 GO:0003723|GO:0006396
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl10g00165 Eupl-Chr10 13237849 13276546 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl10g00165 198 278 Eukaryotic Initiation Factors Gene Family AT1G71770 32.099 2.61e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl10g00165 K12842 - nnu:104609179 1541.17