Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl10g00144 ATGGTGTTGTTGTCCAATGAGCCAAGATGGGAAGATGCAGTGAAGAAGGTGATGTTGGACTTGGTGAAGGAGAACCTTGTAGTAGTAATGAAGATGTCGATTTACATAAGGGCAGTGCTTGGGATAGCTGTGAGGTTAAAGAGGGAATGCATTGTGGTGATTTGCAGGGGAGGTGCAATGTTGCAGGTTCTTCAATGTCCAACAAAGGTGGGGCACGTGGTGCACTTGTTGGAGATGCTGGCTGTTCGTGATGGTGCATGTTGGAAACGAGATGTACTCTGTTGGCAGGTGGCTTCTGGAGGCGGGCAGCGAGCATGCGATGAGAAGATGAATTCGTTCTCTGTTACACGAAAGAAAACCCCTTTTCAGAAACACAGAGAGGAGGAAGAAGCCAAGAAGAAGAGAGTAGAGGATGAAACTGCTCGCCTTTATGCAGAATTTGTAGAGTCGTTTCAAGGAGATAATGCGCCAGGGTCAAAGACTTTTGTTAGAGGAGGAACTATTAATCCCAATGAAAAGCAGAAGCCTGATTTAGAAGGTGGAAATTCTAAAGATGGGGTATCTGTTCCAAAGAAGGGAAGTAGATATGTTCCATCTTTCATACCACCTCCTTTGGCAACCAAAGGAAAAGAACTTGAGAAGAAGGAGGAGAGGCCAAAGGAGAAGGAAAAAGGTAAGTCACGAAACATAGATCATTTTATGGAAGAACTGAAGCTTGAGCAGGAGCTGAGGGAGAGGCGCAATCAAGAGCGTGAACAGTGGCGTGAGGGACGTCATAATGAAAATTCTGCTCCACTTAGCCGATTTGATGAGCTTCCAGATGATTTTGATCCAAGTGGGAAGCTTCCTGGATCATTTGATGACGGGGACCCACAAACTACAAATCTATATGTTGGAAATCTCTCACCACAGGTGGATGAGAATTTTCTTTTGAGGACTTTTGGAAGATTCGGACCTATTGCTAGTGTGAAGATAATGTGGCCTCGGACAGAGGAGGAAAAGAGGCGGCAAAGGAACTGTGGATTTGTTGCTTTCATGAATAGAGCAGATGGACAGGCTGCAAAGGATGAAATGCAAGGGGTTGTTGTTTATGAGTACGAGTTGAAGATAGGATGGGGTAAGTCTGTCTCTCTTCCATCGCAAGCACTACCTGCTCCTCCACCAGGACAGATGGCCATCAGGAGTAAGGAGGGTGGCACTGTGATCCTGTCTGGTCCTGATGGCCAACTAGTAACTTCTGTGACGAATCAGAGCTCTGAGCTGGTTCTTACTCCCAATGTTCCTGATATAATGGTTGTTCCGCCTGAGGATGATCATCTCTGCCATGTAATTGATACGATGGCTCTGCATGTTCTTGATGGTGGATGTGCTTTTGAACAAGCTATAATGGAGAGAGGTCGTGGAAAATCACTTTTTAACTTCTTGTTTGAGCTTGGGTCGAAGGAGCATACTTACTATGTGTGGAGGTTGTACTCCTTTGCTCAGGGTGATACTCTTCAGAGGTGGCGAACAGAGCCTTTCATCATGATAACTGGGAGTGGGAGATGGCTGCCACCTCCTCTGCCATCTATCAAGAGCCCCGAGCACGAGAAGGAGTCTGATACCACATTTGCAGCGGGAAGAAGCAGACGTGTAGAACTGGAACGAACGTTAACAGATCCACAGAGAGATGAGTTTGAGGATATGCTGCGGGGTTTGACATTGGAGAGGAGCCAGATAAAGGAAGCTATGGGCTTTGCTTTAGATAATTCTGATGCAGCTGGGGAGATAGTTGAGGTTCTTACTGAATCTTTGACGCTTAAAGAAACCCCCATACCAACTAAAGTTGCAAGGCTCATGCTTGTCTCCGACATCCTTCATAACAGTAGTGCTCCTGTAAAGAATGCATCTGCATACCGTACTAAATTTGAAGCCACATTACCTGATATAATGGAGAGCTTCAATGACTTGTATCGTAGTATCACGGGAAGGATCACTGCCGAGGCCCTCAAGGAACGAGTTTCAAAGGTTCTCCAAGTATGGGCAGACTGGTTTCTCTTTTCAGATGCATATGTGAATGGACTGCGAGCTACTTTTCTTCGATCTGGGAACTCTGGTGTGATTCCTTTCCATTCTATATGTGGGGATGCTACAGAAATTGAAAACAAAACCAGCTCCGAAGATATGGCTGAGGGTGGTAAGCTCAACCAAGATGCAGCATTGACAATGGGGAAGGGAGCAGCCATGCAGGAGTTGTTGAACCTTCCCCTTGCTGAGTTGGAAAGACGTTGCAGACACAATGGGCTATCGCTTGTTGGGGGTAGGGAAATGATGGTTGCAAGGTTGCTCAGTCTGGAAGAGGCAGAACGACAGAGGGGGCATGACCGAGATGATGACATTAAATATGGACGGAGCCATTCAAACTCAGGTAGATATTCAAAGGTTGACAGTAGCTGGCATGCAAATAATGGTGGTCGTAGAGAGATCAACCTCGGGATGGAACCGGCGGGGTCCCCAGGATGGAATAACTATGGGGAGGATGGGATGCGATTGCAAGGCAAAGGTTCTGCACCTTTGGCCTCAACTCTTCCTATTCCACAGCCTGAACTGAAAGCCTTTTCAAAGAAGGGAAAATCTGATCCCATTTTGCCAGTCTCTAAATGGGCTAGAGAGGATGACGGCAGTGATGATGAAGATAAGAGAAGTGCTCGGGACCTGGGGTTAAGCTACTCATCTTCTGGAAGTGAAAATGCTGGTGATGGTTCTGATAAGGCTGATGAAATGGATGTTGCAGCAGATAGAAGCATTTCATCTCACCCTGACAGTGACATGAATGAAGAACAGAGGAAAAAGCTTAGGCAGCTGGAGGTATCTGTGATCGAATACCGCGAATATCTTGAAGAGCGGGGAATCAGAAGTTCTGAGGAAATTGAGAGGAAGGTCGCAATCCACCGGAGACGGCTAGAATCCGAATTTGGATTATCAGATATTAACAAAGATGTTTCGGGGGACAGTGATCACTTATCTCAGAGGTCGTCTCTGGAGAGGAAGGACAGACGAGGCGATTTCCGTGATTCCTCAAGGAAACGACATCGCAGCCAGAGTAGAAGCCGGAGCCCCCAACACAAGTCATCAACCAAAGACAGGGCAAGGGAAAATGACGTGGACAGGGATCGGGACAGGTACCGTGATAGAGACAGAATTCATGAGCTGGAAAGTGAAAGGAGAAGGGATCGTGAGAAGAGTGGAAGCAAAGAGAGGGACGATCATGATAGGGATAAAGGCAGAGAGGACAGGGATAGGAGGAAAAAGGGGAAATGA 3300 0.4679 MVLLSNEPRWEDAVKKVMLDLVKENLVVVMKMSIYIRAVLGIAVRLKRECIVVICRGGAMLQVLQCPTKVGHVVHLLEMLAVRDGACWKRDVLCWQVASGGGQRACDEKMNSFSVTRKKTPFQKHREEEEAKKKRVEDETARLYAEFVESFQGDNAPGSKTFVRGGTINPNEKQKPDLEGGNSKDGVSVPKKGSRYVPSFIPPPLATKGKELEKKEERPKEKEKGKSRNIDHFMEELKLEQELRERRNQEREQWREGRHNENSAPLSRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEEKRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSVSLPSQALPAPPPGQMAIRSKEGGTVILSGPDGQLVTSVTNQSSELVLTPNVPDIMVVPPEDDHLCHVIDTMALHVLDGGCAFEQAIMERGRGKSLFNFLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWLPPPLPSIKSPEHEKESDTTFAAGRSRRVELERTLTDPQRDEFEDMLRGLTLERSQIKEAMGFALDNSDAAGEIVEVLTESLTLKETPIPTKVARLMLVSDILHNSSAPVKNASAYRTKFEATLPDIMESFNDLYRSITGRITAEALKERVSKVLQVWADWFLFSDAYVNGLRATFLRSGNSGVIPFHSICGDATEIENKTSSEDMAEGGKLNQDAALTMGKGAAMQELLNLPLAELERRCRHNGLSLVGGREMMVARLLSLEEAERQRGHDRDDDIKYGRSHSNSGRYSKVDSSWHANNGGRREINLGMEPAGSPGWNNYGEDGMRLQGKGSAPLASTLPIPQPELKAFSKKGKSDPILPVSKWAREDDGSDDEDKRSARDLGLSYSSSGSENAGDGSDKADEMDVAADRSISSHPDSDMNEEQRKKLRQLEVSVIEYREYLEERGIRSSEEIERKVAIHRRRLESEFGLSDINKDVSGDSDHLSQRSSLERKDRRGDFRDSSRKRHRSQSRSRSPQHKSSTKDRARENDVDRDRDRYRDRDRIHELESERRRDREKSGSKERDDHDRDKGREDRDRRKKGK* 1100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl10g00144 1099 ProSiteProfiles SURP motif repeat profile. 443 486 IPR000061 GO:0003723|GO:0006396
Eupl10g00144 1099 MobiDBLite consensus disorder prediction 208 277 - -
Eupl10g00144 1099 SUPERFAMILY RNA-binding domain, RBD 287 390 IPR035979 GO:0003676
Eupl10g00144 1099 CDD cwf21_RRC1-like 937 986 IPR047491 -
Eupl10g00144 1099 SMART surpneu2 441 495 IPR000061 GO:0003723|GO:0006396
Eupl10g00144 1099 CDD RRM_SR140 293 376 IPR035009 -
Eupl10g00144 1099 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 294 375 IPR000504 GO:0003723
Eupl10g00144 1099 MobiDBLite consensus disorder prediction 1034 1093 - -
Eupl10g00144 1099 MobiDBLite consensus disorder prediction 878 898 - -
Eupl10g00144 1099 PANTHER RNA PROCESSING PROTEIN LD23810P 109 1031 - -
Eupl10g00144 1099 Gene3D - 937 988 - -
Eupl10g00144 1099 MobiDBLite consensus disorder prediction 799 817 - -
Eupl10g00144 1099 ProSiteProfiles CID domain profile. 551 696 IPR006569 -
Eupl10g00144 1099 MobiDBLite consensus disorder prediction 982 1022 - -
Eupl10g00144 1099 MobiDBLite consensus disorder prediction 913 943 - -
Eupl10g00144 1099 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 296 368 IPR000504 GO:0003723
Eupl10g00144 1099 SMART 558neu5 558 693 IPR006569 -
Eupl10g00144 1099 SMART rrm1_1 295 371 IPR000504 GO:0003723
Eupl10g00144 1099 MobiDBLite consensus disorder prediction 781 798 - -
Eupl10g00144 1099 Gene3D - 552 698 IPR008942 -
Eupl10g00144 1099 SUPERFAMILY ENTH/VHS domain 554 693 IPR008942 -
Eupl10g00144 1099 MobiDBLite consensus disorder prediction 982 1099 - -
Eupl10g00144 1099 SUPERFAMILY Surp module (SWAP domain) 419 498 IPR035967 GO:0003723|GO:0006396
Eupl10g00144 1099 MobiDBLite consensus disorder prediction 155 285 - -
Eupl10g00144 1099 Pfam CID domain 558 686 IPR006569 -
Eupl10g00144 1099 Pfam cwf21 domain 939 984 IPR013170 -
Eupl10g00144 1099 Gene3D - 206 378 IPR012677 -
Eupl10g00144 1099 Gene3D Surp module 429 498 IPR035967 GO:0003723|GO:0006396
Eupl10g00144 1099 Pfam Surp module 442 493 IPR000061 GO:0003723|GO:0006396
Eupl10g00144 1099 MobiDBLite consensus disorder prediction 781 943 - -
Eupl10g00144 1099 Coils Coil 126 146 - -
Eupl10g00144 1099 SMART cwf21_2 937 986 IPR013170 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl10g00144 Eupl-Chr10 12801950 12851655 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl10g00144 291 371 Eukaryotic Initiation Factors Gene Family AT1G71770 32.099 2.64e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl10g00144 K12842 - msin:131217053 1548.1