Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Eupl10g00144 | ATGGTGTTGTTGTCCAATGAGCCAAGATGGGAAGATGCAGTGAAGAAGGTGATGTTGGACTTGGTGAAGGAGAACCTTGTAGTAGTAATGAAGATGTCGATTTACATAAGGGCAGTGCTTGGGATAGCTGTGAGGTTAAAGAGGGAATGCATTGTGGTGATTTGCAGGGGAGGTGCAATGTTGCAGGTTCTTCAATGTCCAACAAAGGTGGGGCACGTGGTGCACTTGTTGGAGATGCTGGCTGTTCGTGATGGTGCATGTTGGAAACGAGATGTACTCTGTTGGCAGGTGGCTTCTGGAGGCGGGCAGCGAGCATGCGATGAGAAGATGAATTCGTTCTCTGTTACACGAAAGAAAACCCCTTTTCAGAAACACAGAGAGGAGGAAGAAGCCAAGAAGAAGAGAGTAGAGGATGAAACTGCTCGCCTTTATGCAGAATTTGTAGAGTCGTTTCAAGGAGATAATGCGCCAGGGTCAAAGACTTTTGTTAGAGGAGGAACTATTAATCCCAATGAAAAGCAGAAGCCTGATTTAGAAGGTGGAAATTCTAAAGATGGGGTATCTGTTCCAAAGAAGGGAAGTAGATATGTTCCATCTTTCATACCACCTCCTTTGGCAACCAAAGGAAAAGAACTTGAGAAGAAGGAGGAGAGGCCAAAGGAGAAGGAAAAAGGTAAGTCACGAAACATAGATCATTTTATGGAAGAACTGAAGCTTGAGCAGGAGCTGAGGGAGAGGCGCAATCAAGAGCGTGAACAGTGGCGTGAGGGACGTCATAATGAAAATTCTGCTCCACTTAGCCGATTTGATGAGCTTCCAGATGATTTTGATCCAAGTGGGAAGCTTCCTGGATCATTTGATGACGGGGACCCACAAACTACAAATCTATATGTTGGAAATCTCTCACCACAGGTGGATGAGAATTTTCTTTTGAGGACTTTTGGAAGATTCGGACCTATTGCTAGTGTGAAGATAATGTGGCCTCGGACAGAGGAGGAAAAGAGGCGGCAAAGGAACTGTGGATTTGTTGCTTTCATGAATAGAGCAGATGGACAGGCTGCAAAGGATGAAATGCAAGGGGTTGTTGTTTATGAGTACGAGTTGAAGATAGGATGGGGTAAGTCTGTCTCTCTTCCATCGCAAGCACTACCTGCTCCTCCACCAGGACAGATGGCCATCAGGAGTAAGGAGGGTGGCACTGTGATCCTGTCTGGTCCTGATGGCCAACTAGTAACTTCTGTGACGAATCAGAGCTCTGAGCTGGTTCTTACTCCCAATGTTCCTGATATAATGGTTGTTCCGCCTGAGGATGATCATCTCTGCCATGTAATTGATACGATGGCTCTGCATGTTCTTGATGGTGGATGTGCTTTTGAACAAGCTATAATGGAGAGAGGTCGTGGAAAATCACTTTTTAACTTCTTGTTTGAGCTTGGGTCGAAGGAGCATACTTACTATGTGTGGAGGTTGTACTCCTTTGCTCAGGGTGATACTCTTCAGAGGTGGCGAACAGAGCCTTTCATCATGATAACTGGGAGTGGGAGATGGCTGCCACCTCCTCTGCCATCTATCAAGAGCCCCGAGCACGAGAAGGAGTCTGATACCACATTTGCAGCGGGAAGAAGCAGACGTGTAGAACTGGAACGAACGTTAACAGATCCACAGAGAGATGAGTTTGAGGATATGCTGCGGGGTTTGACATTGGAGAGGAGCCAGATAAAGGAAGCTATGGGCTTTGCTTTAGATAATTCTGATGCAGCTGGGGAGATAGTTGAGGTTCTTACTGAATCTTTGACGCTTAAAGAAACCCCCATACCAACTAAAGTTGCAAGGCTCATGCTTGTCTCCGACATCCTTCATAACAGTAGTGCTCCTGTAAAGAATGCATCTGCATACCGTACTAAATTTGAAGCCACATTACCTGATATAATGGAGAGCTTCAATGACTTGTATCGTAGTATCACGGGAAGGATCACTGCCGAGGCCCTCAAGGAACGAGTTTCAAAGGTTCTCCAAGTATGGGCAGACTGGTTTCTCTTTTCAGATGCATATGTGAATGGACTGCGAGCTACTTTTCTTCGATCTGGGAACTCTGGTGTGATTCCTTTCCATTCTATATGTGGGGATGCTACAGAAATTGAAAACAAAACCAGCTCCGAAGATATGGCTGAGGGTGGTAAGCTCAACCAAGATGCAGCATTGACAATGGGGAAGGGAGCAGCCATGCAGGAGTTGTTGAACCTTCCCCTTGCTGAGTTGGAAAGACGTTGCAGACACAATGGGCTATCGCTTGTTGGGGGTAGGGAAATGATGGTTGCAAGGTTGCTCAGTCTGGAAGAGGCAGAACGACAGAGGGGGCATGACCGAGATGATGACATTAAATATGGACGGAGCCATTCAAACTCAGGTAGATATTCAAAGGTTGACAGTAGCTGGCATGCAAATAATGGTGGTCGTAGAGAGATCAACCTCGGGATGGAACCGGCGGGGTCCCCAGGATGGAATAACTATGGGGAGGATGGGATGCGATTGCAAGGCAAAGGTTCTGCACCTTTGGCCTCAACTCTTCCTATTCCACAGCCTGAACTGAAAGCCTTTTCAAAGAAGGGAAAATCTGATCCCATTTTGCCAGTCTCTAAATGGGCTAGAGAGGATGACGGCAGTGATGATGAAGATAAGAGAAGTGCTCGGGACCTGGGGTTAAGCTACTCATCTTCTGGAAGTGAAAATGCTGGTGATGGTTCTGATAAGGCTGATGAAATGGATGTTGCAGCAGATAGAAGCATTTCATCTCACCCTGACAGTGACATGAATGAAGAACAGAGGAAAAAGCTTAGGCAGCTGGAGGTATCTGTGATCGAATACCGCGAATATCTTGAAGAGCGGGGAATCAGAAGTTCTGAGGAAATTGAGAGGAAGGTCGCAATCCACCGGAGACGGCTAGAATCCGAATTTGGATTATCAGATATTAACAAAGATGTTTCGGGGGACAGTGATCACTTATCTCAGAGGTCGTCTCTGGAGAGGAAGGACAGACGAGGCGATTTCCGTGATTCCTCAAGGAAACGACATCGCAGCCAGAGTAGAAGCCGGAGCCCCCAACACAAGTCATCAACCAAAGACAGGGCAAGGGAAAATGACGTGGACAGGGATCGGGACAGGTACCGTGATAGAGACAGAATTCATGAGCTGGAAAGTGAAAGGAGAAGGGATCGTGAGAAGAGTGGAAGCAAAGAGAGGGACGATCATGATAGGGATAAAGGCAGAGAGGACAGGGATAGGAGGAAAAAGGGGAAATGA | 3300 | 0.4679 | MVLLSNEPRWEDAVKKVMLDLVKENLVVVMKMSIYIRAVLGIAVRLKRECIVVICRGGAMLQVLQCPTKVGHVVHLLEMLAVRDGACWKRDVLCWQVASGGGQRACDEKMNSFSVTRKKTPFQKHREEEEAKKKRVEDETARLYAEFVESFQGDNAPGSKTFVRGGTINPNEKQKPDLEGGNSKDGVSVPKKGSRYVPSFIPPPLATKGKELEKKEERPKEKEKGKSRNIDHFMEELKLEQELRERRNQEREQWREGRHNENSAPLSRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEEKRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSVSLPSQALPAPPPGQMAIRSKEGGTVILSGPDGQLVTSVTNQSSELVLTPNVPDIMVVPPEDDHLCHVIDTMALHVLDGGCAFEQAIMERGRGKSLFNFLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWLPPPLPSIKSPEHEKESDTTFAAGRSRRVELERTLTDPQRDEFEDMLRGLTLERSQIKEAMGFALDNSDAAGEIVEVLTESLTLKETPIPTKVARLMLVSDILHNSSAPVKNASAYRTKFEATLPDIMESFNDLYRSITGRITAEALKERVSKVLQVWADWFLFSDAYVNGLRATFLRSGNSGVIPFHSICGDATEIENKTSSEDMAEGGKLNQDAALTMGKGAAMQELLNLPLAELERRCRHNGLSLVGGREMMVARLLSLEEAERQRGHDRDDDIKYGRSHSNSGRYSKVDSSWHANNGGRREINLGMEPAGSPGWNNYGEDGMRLQGKGSAPLASTLPIPQPELKAFSKKGKSDPILPVSKWAREDDGSDDEDKRSARDLGLSYSSSGSENAGDGSDKADEMDVAADRSISSHPDSDMNEEQRKKLRQLEVSVIEYREYLEERGIRSSEEIERKVAIHRRRLESEFGLSDINKDVSGDSDHLSQRSSLERKDRRGDFRDSSRKRHRSQSRSRSPQHKSSTKDRARENDVDRDRDRYRDRDRIHELESERRRDREKSGSKERDDHDRDKGREDRDRRKKGK* | 1100 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Eupl10g00144 | 1099 | ProSiteProfiles | SURP motif repeat profile. | 443 | 486 | IPR000061 | GO:0003723|GO:0006396 | |
Eupl10g00144 | 1099 | MobiDBLite | consensus disorder prediction | 208 | 277 | - | - | |
Eupl10g00144 | 1099 | SUPERFAMILY | RNA-binding domain, RBD | 287 | 390 | IPR035979 | GO:0003676 | |
Eupl10g00144 | 1099 | CDD | cwf21_RRC1-like | 937 | 986 | IPR047491 | - | |
Eupl10g00144 | 1099 | SMART | surpneu2 | 441 | 495 | IPR000061 | GO:0003723|GO:0006396 | |
Eupl10g00144 | 1099 | CDD | RRM_SR140 | 293 | 376 | IPR035009 | - | |
Eupl10g00144 | 1099 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 294 | 375 | IPR000504 | GO:0003723 | |
Eupl10g00144 | 1099 | MobiDBLite | consensus disorder prediction | 1034 | 1093 | - | - | |
Eupl10g00144 | 1099 | MobiDBLite | consensus disorder prediction | 878 | 898 | - | - | |
Eupl10g00144 | 1099 | PANTHER | RNA PROCESSING PROTEIN LD23810P | 109 | 1031 | - | - | |
Eupl10g00144 | 1099 | Gene3D | - | 937 | 988 | - | - | |
Eupl10g00144 | 1099 | MobiDBLite | consensus disorder prediction | 799 | 817 | - | - | |
Eupl10g00144 | 1099 | ProSiteProfiles | CID domain profile. | 551 | 696 | IPR006569 | - | |
Eupl10g00144 | 1099 | MobiDBLite | consensus disorder prediction | 982 | 1022 | - | - | |
Eupl10g00144 | 1099 | MobiDBLite | consensus disorder prediction | 913 | 943 | - | - | |
Eupl10g00144 | 1099 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 296 | 368 | IPR000504 | GO:0003723 | |
Eupl10g00144 | 1099 | SMART | 558neu5 | 558 | 693 | IPR006569 | - | |
Eupl10g00144 | 1099 | SMART | rrm1_1 | 295 | 371 | IPR000504 | GO:0003723 | |
Eupl10g00144 | 1099 | MobiDBLite | consensus disorder prediction | 781 | 798 | - | - | |
Eupl10g00144 | 1099 | Gene3D | - | 552 | 698 | IPR008942 | - | |
Eupl10g00144 | 1099 | SUPERFAMILY | ENTH/VHS domain | 554 | 693 | IPR008942 | - | |
Eupl10g00144 | 1099 | MobiDBLite | consensus disorder prediction | 982 | 1099 | - | - | |
Eupl10g00144 | 1099 | SUPERFAMILY | Surp module (SWAP domain) | 419 | 498 | IPR035967 | GO:0003723|GO:0006396 | |
Eupl10g00144 | 1099 | MobiDBLite | consensus disorder prediction | 155 | 285 | - | - | |
Eupl10g00144 | 1099 | Pfam | CID domain | 558 | 686 | IPR006569 | - | |
Eupl10g00144 | 1099 | Pfam | cwf21 domain | 939 | 984 | IPR013170 | - | |
Eupl10g00144 | 1099 | Gene3D | - | 206 | 378 | IPR012677 | - | |
Eupl10g00144 | 1099 | Gene3D | Surp module | 429 | 498 | IPR035967 | GO:0003723|GO:0006396 | |
Eupl10g00144 | 1099 | Pfam | Surp module | 442 | 493 | IPR000061 | GO:0003723|GO:0006396 | |
Eupl10g00144 | 1099 | MobiDBLite | consensus disorder prediction | 781 | 943 | - | - | |
Eupl10g00144 | 1099 | Coils | Coil | 126 | 146 | - | - | |
Eupl10g00144 | 1099 | SMART | cwf21_2 | 937 | 986 | IPR013170 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Eupl10g00144 | Eupl-Chr10 | 12801950 | 12851655 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Eupl10g00144 | 291 | 371 | Eukaryotic Initiation Factors Gene Family | AT1G71770 | 32.099 | 2.64e-06 | 49.7 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Eupl10g00144 | K12842 | - | msin:131217053 | 1548.1 |