Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl10g00105 ATGGCTGGGTTCAAGAAATCCTCAGTTCCACGCCAATCTTCCTACAATTCCCTCTATGTGAATCCCCTCAATGAGCTCAAACACAACCGATGCAGCAGCGAAGGTGACCGTATCAATGGTGGGATTCTCGGCCTTCAGTTGTGCCGGAATCCCGTCATTGTATCTGACAACAAGGAAAATGTAGTCCCCAACAAGAAACAAACTGCTTGTTCCGACAACAAAGAAAATACAGTCCCCACCGTCAACAACAACAACAACAACGGTTCTTCTGCTAAGCAAAAACAGTTTCTAGATGGGAAATCTCCCTCATCTGTGGGTTCCAAGAAAAAGATCTTGAAGCCATCTTCACTCCAACAATGTATGCAATTGAACGAGCCTGATTCGAATTTTGGGTTGAAACTTTGCGACCCATTAGAGTCTGAGAATTCGAACCGGCTGAACGTTTGGGACTTTTCGGATTCTGAAGCTGCACCGGCTTCTTCTTGGTCTACTCTCCCTAATAGGTCTTTGTTGTGTAGGCCTCTGCCTTTGGATATAGGGAGGTGTACTTGTGTTATAGTGAAGGAAACATCTTCAGAGGGACTGGATGGGGGCTCTCTATATTCTCTTTACACCAATGAGGGTCATGGACGACAGGATCGGAAACTCGCTGTGGCTCATCACAGACGGCGGAACGGAAGGTCTGAGTTCACCATAGCTCAGAACACAAAGGGGTTATTTTGTAGCTCAGATGAGAGCTTGTTGGGAACTATAACAGCTAACTTCATGGGATCAAGATACCACATATGGGACCAGGGGACCCCGCTCGATTCCCTAAAGAAGCAGCCTAAGCTACTTCTCGCCGTTGTAGCATTTGTGCCTACCATAACTACCTGTACAGGAAGTTACAGAAGCTTGAGGGCATGGATACCCAAGCATCAATCCATGCAATTAAAGAATACAACCCAGATTCAACATATCAATGGACTGCCTAAGGATTGGGAGGGGAAAACGAATAAAGCTCATCAGCTCTTCTCAAAGGTTCCACATTACAGTAATATTTCAAGGCAATATGAATTAGATTTTAGAGAAAGGGGAAGAACTGGACTTAGAATTCAAAGTTCAGCAAAGAACTTCCAGTTAACAATGGAGGAGAACGGACGGCAATCTATCCTGCAGCTGGGAAGAGTAGGGAAGTCAAAGTATGTGATGGATTACAGGTTTGTCACATCGAGCGAGATTCGACCCGATACAGACTCATATGTTGCGGGTTTGGATCTACATTGTACCCTTGAGAGTGTCAAACATGTTTCGGGATGGACCGACTAG 1308 0.4534 MAGFKKSSVPRQSSYNSLYVNPLNELKHNRCSSEGDRINGGILGLQLCRNPVIVSDNKENVVPNKKQTACSDNKENTVPTVNNNNNNGSSAKQKQFLDGKSPSSVGSKKKILKPSSLQQCMQLNEPDSNFGLKLCDPLESENSNRLNVWDFSDSEAAPASSWSTLPNRSLLCRPLPLDIGRCTCVIVKETSSEGLDGGSLYSLYTNEGHGRQDRKLAVAHHRRRNGRSEFTIAQNTKGLFCSSDESLLGTITANFMGSRYHIWDQGTPLDSLKKQPKLLLAVVAFVPTITTCTGSYRSLRAWIPKHQSMQLKNTTQIQHINGLPKDWEGKTNKAHQLFSKVPHYSNISRQYELDFRERGRTGLRIQSSAKNFQLTMEENGRQSILQLGRVGKSKYVMDYRFVTSSEIRPDTDSYVAGLDLHCTLESVKHVSGWTD* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl10g00105 435 Gene3D Tubby Protein; Chain A 167 405 IPR025659 -
Eupl10g00105 435 PRINTS Tubby superfamily signature 360 376 IPR000007 -
Eupl10g00105 435 PRINTS Tubby superfamily signature 247 271 IPR000007 -
Eupl10g00105 435 PRINTS Tubby superfamily signature 380 399 IPR000007 -
Eupl10g00105 435 MobiDBLite consensus disorder prediction 60 108 - -
Eupl10g00105 435 Pfam Tub family 172 401 IPR000007 -
Eupl10g00105 435 SUPERFAMILY Tubby C-terminal domain-like 159 402 IPR025659 -
Eupl10g00105 435 PANTHER TUBBY-RELATED 51 401 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl10g00105 56 317 TUB Transcription Factor Family AT1G16070 56.061 1.40e-94 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Eupl10g00105 Tub 4.6e-30 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl10g00105 K19600 - ming:122081234 599.356