Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl10g00095 ATGCCGGACCTCGGCAATCTCTTCAACTCCTCTGCCTTGGCACTTTCTCATTGCCCTAATCTCTTATCGGTCTCCGACCCTTGCGACTCCAGCGGTTCTTTGTTTCCGAACCCGGTCGAATCGAAACCCCTAGACGAAGCAAACGGTTGGTGTTGCAGTTGGGATCGTCGACTACGGTATCCGATCGTGCAGAAAGGGAGAATTTGCGCCCGAAGGAACAACGTGGGAGCTACGGAGAGAAGTAAGAAATCGACGGCTGGTAAGTCTTTGGAGGATCATGTGAGGGTTTGGGTGGAGAAGAAGGTGGAATCTGGTGTTCCTGAAAGAGAATGCGTCCTCCCGTTCCTCGTCGATGCTCCAAGAATGGCTGAGTGTCGCAAATGCAGTAAATTTATATACCCTGGTGAAGAAGTGTTGTGCTCTGTTCGTGGTTGTCAAGAAGCCTATCACATAGTATGCGCAAAGGACTTGCTTAAATTCTCTACTTCGAGAAATTTCAAGTGCCCACAACATGTTTGCTTCATTTGCAAACAAAAAGGATATTGGCGTTGTGTACGATGCACGGTAGCATCGCATGTTAATTGTGCACCCTGGCCAGATAAAGTGATCCAGCTAACCAATTATCCGAGACGGGCAGTTTGTTGGAGGCATCCAACTGATTGGCGGTTGGAAAAGAAGCATGCAGTTCCGACACGTGACATAGAGGAAATATTTCGCAGCTTGCCTCTACCGTACATTGAGGAGGAATTTAAGATTGACGTGGTATGGAAGGACATGATGGAGAATAAAATGGAGCCAACTCCGTATGTACACATCAGGCGCAATGTGTACCTAGTCAAGAAGAAGCGTGATGATGCAGATGCTGGTATTGGGTGCACAAATTGCAATGCTACTATGTGCTCCGAGGATTGCGTTTGCAGGGTTCAATCCATCAGCTGCTCAAAGGCTTGTCATTGCTCAGAAATGTGTACAAATAGACCATTTCGCAAAGAGAAAAAGGTTAAAGTCATTAAGACTCAATTTTGTGGATGGGGAGTAGAGGCAGCTGAAGCCATTAAGAAAGGGGATTTTATAATTGAATATATTGGGGAAGTTATTGATGATGCCTTATGTGAACAAAGGCTTTGGGACATGAAATATAGAGGTGATCATAATTTTTATATGTGTGAAATTCGGAAGGACTTTACAATTGACGCAACTTTCAAGGGCAACACTGCTCGTTTCCTGAACCACAGCTGTCATCCTAACTGCAAACTGGAAAAATGGCAAGTTGATGGGGAGACACGTGTGGGAGTGTTTGCTGCTCAATCTATAAACGTTGGAGAACCATTAACTTACGATTACAGATTTGTGCACTTCGGATCTATGGTGAAGTGCTGTTGTGGTGCTCCAAACTGTCAAGGATACCTAGGTGCCAAGAGGAAGGTTGATAAGGTGGACTTATGCTGGGGTTCCAAACGCAGGAGATCATCAAAGAAATGCTTGGAGATCATACATGAATGA 1503 0.4531 MPDLGNLFNSSALALSHCPNLLSVSDPCDSSGSLFPNPVESKPLDEANGWCCSWDRRLRYPIVQKGRICARRNNVGATERSKKSTAGKSLEDHVRVWVEKKVESGVPERECVLPFLVDAPRMAECRKCSKFIYPGEEVLCSVRGCQEAYHIVCAKDLLKFSTSRNFKCPQHVCFICKQKGYWRCVRCTVASHVNCAPWPDKVIQLTNYPRRAVCWRHPTDWRLEKKHAVPTRDIEEIFRSLPLPYIEEEFKIDVVWKDMMENKMEPTPYVHIRRNVYLVKKKRDDADAGIGCTNCNATMCSEDCVCRVQSISCSKACHCSEMCTNRPFRKEKKVKVIKTQFCGWGVEAAEAIKKGDFIIEYIGEVIDDALCEQRLWDMKYRGDHNFYMCEIRKDFTIDATFKGNTARFLNHSCHPNCKLEKWQVDGETRVGVFAAQSINVGEPLTYDYRFVHFGSMVKCCCGAPNCQGYLGAKRKVDKVDLCWGSKRRRSSKKCLEIIHE* 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl10g00095 500 ProSiteProfiles SET domain profile. 332 449 IPR001214 GO:0005515
Eupl10g00095 500 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 118 220 IPR013083 -
Eupl10g00095 500 SMART shorttest3 287 333 IPR006560 GO:0005634|GO:0042054
Eupl10g00095 500 ProSiteProfiles Post-SET domain profile. 455 471 IPR003616 -
Eupl10g00095 500 FunFam Histone-lysine N-methyltransferase 245 481 - -
Eupl10g00095 500 SMART set_7 332 455 IPR001214 GO:0005515
Eupl10g00095 500 SMART PHD_3 124 172 IPR001965 -
Eupl10g00095 500 ProSiteProfiles AWS domain profile. 285 332 IPR006560 GO:0005634|GO:0042054
Eupl10g00095 500 SUPERFAMILY FYVE/PHD zinc finger 122 177 IPR011011 -
Eupl10g00095 500 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 500 IPR025787 -
Eupl10g00095 500 PANTHER SET DOMAIN PROTEINS 65 492 - -
Eupl10g00095 500 Gene3D SET domain 243 492 IPR046341 -
Eupl10g00095 500 Pfam SET domain 343 448 IPR001214 GO:0005515
Eupl10g00095 500 SUPERFAMILY SET domain 253 468 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl10g00095 Eupl-Chr10 11018130 11077332 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl10g00095 313 470 C2H2 Transcription Factor Family AT2G23740 35.359 5.54e-21 95.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Eupl10g00095 SET 7.2e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl10g00095 - - nnu:104605407 822.772