Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl10g00062 ATGGCGTTAATCGATGCGCATGTTGTAAAGGTGGGCATTGTACTAGGTTTAAGAGGGTATCCTATGAACAAGCTGTCCGGTGAGAGGGCTGACGGCCAAAATGCGACATCTACCGTCGATGTTGGGGTGATTCTTGATTTGGATACGTGGGTGGGGAAGACGAGCCAAAGTTGCATTTCGATGGCCCTCTCCGATTTCTACTCTACTCACAAGAACTACACAAAAAGGATGGTCCTTCACACCAGGGACTCCAAGAAAAACAGTGTGGATGCTGCATCAGCAGCTATAGACCTACTGAAAAATGTTCAAGTGCAAGCCATACTTGGGCCTCAAAAATCTGTTCAGGCAGAATTTGTAGTGGATATTGGAAACAAAACTCAGGTACCCATCATATCATTTTCGGCAACGAGCCCTTCCCTCTCATTTGCCGAAACTCCTTATTTCATCCGAGCAGCGTTGAACGACTCCTCTCAGGTGAAAGCCATCGCCGCAATTGTTCAAGCCTTCAGATGGAGAGAAGTTATCCCCATCTATGAAGGCAGCGATTTTGGAAAAGGCATCTTACCATATCTAATCGATACAATCCAAGAGATTAATGCCCGTGTCCCCTATAGGAGTGTTGTTTCTTCTTCAGCCACTGATGATCAGATCCTCGGAGAGCTTTATAAATTGATGACGATGCACACGAGGGTTTTCGTAGTGCACATGTCATCATCTCTTGGCTCCCGCCTTTTTTTGAAAGCGAAAGAAATCGGAATGATGAATAAAGGGTATGCATGGATCATCACAGATGGGCTTACAAATCTCTTAGGTTCCATGGATTCCTCCATCATCAACTCGATGCAAGGAGTACTAGGTGTAAAGCCTTATGTTCCAAGAACGAAAGCACTTGACAATTTCAAAAGTAGATGGAAAAGAAAATTTCTACTTGAGAATCCAGACATCGATAGAGCTGAGCTAAGTGTTATTGGACTATGGGCATATGATAGCATTTGGGCACTAGCAATGGCAGTGGAGAAAGTTTCTGTTGTCAGTCGTCGATTCAAGGAGCCGAACAACGGAGACAACTCGACGGACCTGGCAACCCTTGGAATGTCTCATATGGGTCCAAAGCTCCTTGAAGCGATCTTGGAGACTAGATTTGAAGGATTGAGTGGGGAATTCTGGCTTTTGGACGGGCAATTGCAATCGTCAACATTCCAAATAGTCAATGTGATTGGAAAAGGCGATAGAGAGATTGGGTTCTGGACTCCAGCCCATGGAATTTCCAAGAAATTGGACAAGGTTGATAAGAAATTGTATTCAGTCTCTATGGATGATCTCCGAGCCATAGTCTGGCCAGGAGAATCGACGGTAGTGCCGAAGGGTTGGGAGGTGCCAACAAATGAGAAGAAGTTGAAGATTGGAGTTCCAGTGAAAGATGGTTTCACTGAATTTGTGAAGGTGGAACGGGATCGTCACACCAATGCTATAATGGTCACTGGATTTTGCATAGATGTCTTCAAGACTGTCATGGAATCATTGCCATACGCCGTTCCCTATGAGTTTGTTCCCTTTGAGAAAACTGATGGCACGAGTGCAGGGAATTATAACAGTCTAGTCTACCAGATTTATCTTCAGAAATATGATGCTGTAGTTGGAGATACGGCAATTCTAGCCAACCGATCTTTGTATGTAGATTTCACATTGCCTTTTACGGAGTCTGGGGTGGCGATGGTAGTGCCAATAAAGGATGATGAGAGGAAGAATCCATGGATTTTCTTAAAGCCTTTGACTATGGACCTTTGGCTAACGACTGGAGTGTTTTTCATCTTCACCGGCTTCGTGGTTTGGGTTATTGAGCACCCTATAAACATTGATTTCAGAGGCTCACCTGCCCAACAAATCGGCATGATATTTTGGTTCTCCTTCTCAACTCTTGTGTTTGCCCATAAGGAAAAGGTGATAAGCAACTTGTCTAGGTTTGTGGTGATTGTATGGATATTTGTTGTCCTCATTCTGACATCAAGTTATACGGCGAATTTAACATCAATGTTAACAGTAGAGAAGCTCCAACCAACCGTCACGGACATCAAAGATCTCATTAAGAATGGAGACTATGTAGGCTACCAAAGGGGTTCATTCGTTACAGGACTTATGGAGAGCTTGAACTTCGACCAGTCCAAGCTTAGGATGTATAACACTCCAGAAGAGTATAACGAGGCCATGTCAAGAGGGAGTCGAGATGGTGGTGTTGCTGTCATTATTGATGAGATTCCTTACATCAAGCTCTTCCTTGCGAAGTATTGCACCAAATACATGATGGTTGGACCGACCTACAAGACTGCTGGCTTTGGCTTTGCCTTCCCCAAGGGCTCTCCTCTAGTACCTGACATTTCGAGGGTGGTCTTAAATATAACTGAGGGAGAGAAGATGGTGGCGATCGAGCAGGCATGGTTTGGGAATCAGACTTATTGTATAGAGCAAGGAGGGACCAATGTCACCTCTAACAGCCTCACTCTCGATAGCTTTAGGGGCCTTTTCCTTATTGCTGGAGTCACTTTAGCTTGTGCTCTTTTCATATTCTTGTTTACATTCCTTTATGAGCATAGGGACATTTTATCTTCTGAAGATTCTATTCGACAAAAGCTCGTATCTATGGCCAAACACTTTGATCAGCTGATAGACCCCTCTTCTCATGCATCCAATAAGACAAAACCCTCATGTAAAGGGACAACAAAAGAGGTAGGAAATGTTGAGCATCCAAATGATACAAAGACTCCACAAAGTCCAGCAATAAGCATATCTCTCCATGTCGATGCAATATTCCCCCAAGAAGATGGTTTCTCTACAGAAGCTAGCATGCCAACTCGAGACCCACTAAATGTAATAGAGATAACTCAAGTAAATTGA 2892 0.4388 MALIDAHVVKVGIVLGLRGYPMNKLSGERADGQNATSTVDVGVILDLDTWVGKTSQSCISMALSDFYSTHKNYTKRMVLHTRDSKKNSVDAASAAIDLLKNVQVQAILGPQKSVQAEFVVDIGNKTQVPIISFSATSPSLSFAETPYFIRAALNDSSQVKAIAAIVQAFRWREVIPIYEGSDFGKGILPYLIDTIQEINARVPYRSVVSSSATDDQILGELYKLMTMHTRVFVVHMSSSLGSRLFLKAKEIGMMNKGYAWIITDGLTNLLGSMDSSIINSMQGVLGVKPYVPRTKALDNFKSRWKRKFLLENPDIDRAELSVIGLWAYDSIWALAMAVEKVSVVSRRFKEPNNGDNSTDLATLGMSHMGPKLLEAILETRFEGLSGEFWLLDGQLQSSTFQIVNVIGKGDREIGFWTPAHGISKKLDKVDKKLYSVSMDDLRAIVWPGESTVVPKGWEVPTNEKKLKIGVPVKDGFTEFVKVERDRHTNAIMVTGFCIDVFKTVMESLPYAVPYEFVPFEKTDGTSAGNYNSLVYQIYLQKYDAVVGDTAILANRSLYVDFTLPFTESGVAMVVPIKDDERKNPWIFLKPLTMDLWLTTGVFFIFTGFVVWVIEHPINIDFRGSPAQQIGMIFWFSFSTLVFAHKEKVISNLSRFVVIVWIFVVLILTSSYTANLTSMLTVEKLQPTVTDIKDLIKNGDYVGYQRGSFVTGLMESLNFDQSKLRMYNTPEEYNEAMSRGSRDGGVAVIIDEIPYIKLFLAKYCTKYMMVGPTYKTAGFGFAFPKGSPLVPDISRVVLNITEGEKMVAIEQAWFGNQTYCIEQGGTNVTSNSLTLDSFRGLFLIAGVTLACALFIFLFTFLYEHRDILSSEDSIRQKLVSMAKHFDQLIDPSSHASNKTKPSCKGTTKEVGNVEHPNDTKTPQSPAISISLHVDAIFPQEDGFSTEASMPTRDPLNVIEITQVN* 964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl10g00062 963 PIRSF IGluLR_plant 20 941 IPR017103 -
Eupl10g00062 963 CDD PBP1_GABAb_receptor_plant 40 423 IPR044440 -
Eupl10g00062 963 FunFam Glutamate receptor 2.7 721 821 - -
Eupl10g00062 963 SMART GluR_14 465 815 IPR001320 GO:0015276|GO:0016020
Eupl10g00062 963 FunFam Glutamate receptor 465 584 - -
Eupl10g00062 963 SUPERFAMILY Periplasmic binding protein-like II 442 815 - -
Eupl10g00062 963 Gene3D - 156 320 - -
Eupl10g00062 963 Pfam Bacterial extracellular solute-binding proteins, family 3 493 815 IPR001638 -
Eupl10g00062 963 Pfam Ligand-gated ion channel 816 847 IPR001320 GO:0015276|GO:0016020
Eupl10g00062 963 Pfam Receptor family ligand binding region 56 406 IPR001828 -
Eupl10g00062 963 SUPERFAMILY Periplasmic binding protein-like I 37 457 IPR028082 -
Eupl10g00062 963 CDD GluR_Plant 464 813 - -
Eupl10g00062 963 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 39 891 IPR015683 -
Eupl10g00062 963 FunFam Glutamate receptor 160 317 - -
Eupl10g00062 963 MobiDBLite consensus disorder prediction 890 905 - -
Eupl10g00062 963 FunFam Glutamate receptor 329 464 - -
Eupl10g00062 963 Gene3D - 759 821 - -
Eupl10g00062 963 Gene3D - 362 464 - -
Eupl10g00062 963 MobiDBLite consensus disorder prediction 890 923 - -
Eupl10g00062 963 FunFam Glutamate receptor 584 714 - -
Eupl10g00062 963 Gene3D - 584 725 - -
Eupl10g00062 963 Gene3D - 465 583 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl10g00062 Eupl-Chr10 8217910 8240221 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl10g00062 28 924 Ion Channels AT2G29120 50.717 0.0 906
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl10g00062 K05387 - nnu:104599081 1236.86