LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Eupl10g00025	ATGAGTACCTTTTATATGACACAAAGTTCAAATTTGAGTTGTCAAAAGAGTTCTTTAATGCAAGAAATTTCCATGCAGGTTGAAGTTAATGATGTGCCTGCAGATACTAAGGATAAGGATGAGATTCTTGAGAGTGAATTTTTTGACACCAGGCAGGCATTTCTGAGTCTTTGTCAAGGAAACCATTATCAGTATGATACTCTACGTCGGGCTAAGCATTCCTCGATGATGGTCCTATATCACCTTCATAATCCAACTGCACCTGCCTTTGTGACTACATGCAACATCTGCCATCAGGACATTGAAGCGGGTCAGGGATGGCGCTGTGAAATCTGCCCTGATTATGATGTATGCAATGCTTGTTATCAAAAGGATAGAGGTGTTGATCACCCTCATAAGTTGACAAATCATCCATCCATAGCTGATCGTGATGCACAGAACAAAGAGGCTCGGCAGAAACGAGTTTTGCAGCTTAGGAAAATGCTCGATCTTCTGGTGCACGCCTCTCAATGTCGCTTTCCACAATGCCAGTACCCAAACTGCCGTAAGGTCAAGGGTCTATTCCGCCATGGTATACAATGCAAAACCCGTGCTTCTGGAGGTTGTGTTCTCTGTAAGAAAATGTGGTATCTCCTTCAACTGCATGCTCGAGCTTGCAAAGAATCAGAATGCCATGTACCACGTTGCAAGGATTTGAAAGAACATTTGCGGAGGTTGCAACAGCAGTCAGATTCTCGGCGTAGGGCTGCAGTGATGGAGATGATGAGACAGCGAGCTGCAGAGGTTGCAGGGAGCTCCGGGTGA	804	0.4502	MSTFYMTQSSNLSCQKSSLMQEISMQVEVNDVPADTKDKDEILESEFFDTRQAFLSLCQGNHYQYDTLRRAKHSSMMVLYHLHNPTAPAFVTTCNICHQDIEAGQGWRCEICPDYDVCNACYQKDRGVDHPHKLTNHPSIADRDAQNKEARQKRVLQLRKMLDLLVHASQCRFPQCQYPNCRKVKGLFRHGIQCKTRASGGCVLCKKMWYLLQLHARACKESECHVPRCKDLKEHLRRLQQQSDSRRRAAVMEMMRQRAAEVAGSSG*	268

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Eupl10g00025	267	ProSiteProfiles	Zinc finger TAZ-type profile.	149	232	IPR000197	-
	Eupl10g00025	267	ProSiteProfiles	CBP/p300-type histone acetyltransferase (HAT) domain profile.	1	87	IPR031162	GO:0004402
	Eupl10g00025	267	ProSiteProfiles	Zinc finger ZZ-type profile.	89	142	IPR000433	GO:0008270
	Eupl10g00025	267	ProSitePatterns	Zinc finger ZZ-type signature.	94	121	IPR000433	GO:0008270
	Eupl10g00025	267	Gene3D	TAZ domain	146	263	IPR035898	-
	Eupl10g00025	267	SUPERFAMILY	RING/U-box	70	138	-	-
	Eupl10g00025	267	Pfam	TAZ zinc finger	159	229	IPR000197	-
	Eupl10g00025	267	Pfam	Zinc finger, ZZ type	91	133	IPR000433	GO:0008270
	Eupl10g00025	267	PANTHER	CBP/P300-RELATED	30	258	IPR013178	GO:0004402\|GO:0006355\|GO:0016573
	Eupl10g00025	267	SMART	zz_5	88	134	IPR000433	GO:0008270
	Eupl10g00025	267	FunFam	Histone acetyltransferase HAC1-like protein	146	263	-	-
	Eupl10g00025	267	Gene3D	-	87	139	IPR043145	-
	Eupl10g00025	267	SMART	TAZ_2	152	230	IPR000197	-
	Eupl10g00025	267	FunFam	Histone acetyltransferase HAC1	88	139	-	-
	Eupl10g00025	267	Coils	Coil	229	249	-	-
	Eupl10g00025	267	SUPERFAMILY	TAZ domain	151	233	IPR035898	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Eupl10g00025	Eupl-Chr10	4207387	4209692	Dispersed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	TAZ	Eupl10g00025		zf-TAZ	2.5e-14	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Eupl10g00025	K04498		-	nnu:104599204	484.952