Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl10g00023 ATGGACATATGGTGCTTCTACGCGCAGGTCTTGCTGTGTGCCAATTCTAAATGCAAGAGGTATTTCCACAACCGATTGAAGCCGCCAAAGCTGACCTGGGCGGCTATGTACATGAAGCAATGTAAGAAGGTATTGGAACTTGCCGGAAATGCTACTAGGGATAACAAGAAGTCTTGTATAATTTTGAGACATGTTCTTTTGGCTGTGAGGAATGATGATGAGCTTGGGAAATTGATGCCTGGGGTGACCATTGTTCATGGTGATGTTCTTCCTAACATCCATTCAATTTTATTACCAATTGAAAAGACTTCTTTTTATCAAAAT 324 0.4105 MDIWCFYAQVLLCANSKCKRYFHNRLKPPKLTWAAMYMKQCKKVLELAGNATRDNKKSCIILRHVLLAVRNDDELGKLMPGVTIVHGDVLPNIHSILLPIEKTSFYQN 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl10g00023 108 Gene3D Histone, subunit A 16 99 IPR009072 GO:0046982
Eupl10g00023 108 SMART h2a4 7 104 IPR002119 GO:0000786|GO:0003677|GO:0030527
Eupl10g00023 108 SUPERFAMILY Histone-fold 42 99 IPR009072 GO:0046982
Eupl10g00023 108 Pfam C-terminus of histone H2A 73 102 IPR032454 -
Eupl10g00023 108 PRINTS Histone H2A signature 39 52 IPR002119 GO:0000786|GO:0003677|GO:0030527
Eupl10g00023 108 PRINTS Histone H2A signature 67 79 IPR002119 GO:0000786|GO:0003677|GO:0030527
Eupl10g00023 108 PRINTS Histone H2A signature 81 99 IPR002119 GO:0000786|GO:0003677|GO:0030527
Eupl10g00023 108 PANTHER HISTONE H2A 34 99 IPR002119 GO:0000786|GO:0003677|GO:0030527
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl10g00023 Eupl-Chr10 4044306 4055470 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl10g00023 8 43 Cytoplasmic Ribosomal Protein Gene Family AT3G53020 72.222 1.74e-12 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl10g00023 K11251 - msin:131239246 95.5153