Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl10g00016 ATGTATGTGTCTGAACTCGATGACTCAATGGAATTGAAGAAGGAGAAGGTGGTGAGGTTTTATCCTGATGGAAAACAACACCTTGAATTGCCATGTGAAAAACCTGATTCTCCCAACCTAGAAAAGCCCTCACCTTCACCTGTATACAAGGTTTCAGCTCCTTTGCTGAAACTTGATGGCGGTGGTGGCGGCGGTGGCGGTGGCGGAGATGGTGGTGGGTATAGAAGTAGAATTACTGAGACTCTGAAATTTGGGAGGTCTAAAGTATTTTCCGAGGACCATGAGCCCTGGGGGCAGAGGATACTGGATCCGGGAAGCGAGCTTGTCTTGCAATGGAATCGGGTTTTCCTTTTCTCGTGCTTGGTGGCTCTTTTTGTTGACCCATTGTATTTCTATCTCCCTTCAATGGGTGTCGTCAGAGACTCTTCATGTATCAAGATGGATTTGAATCTGAGAATTGTTGTGACCTTTTTCCGAACTATTGCCGATATGTTATATTTATTGCACATGGTCATCAAGTTTCGGATGGCATATGTAGCTCCAAGCTCACGGGTATTTGGGAGGGGTGAACTTGTCATGGATCCAAAGAAGATTGCCAGGAGGTACTTAAGATCAGATTTCTTTATAGATTTGGCAGCAACACTGCCTCTTCCTCAGATTGTCATCTGGTTCATTATACCAGCAATTAGGAACACCCATTCTGATCATAACAACAATGCCCTTATGCTGATTGTTCTGCTCCAATATGTTCCCAGATTATATCTGATTTTCCCGTTAAGTTCTCAAATTATCAAAGCTACTGGAGTAGTCACGAAAACTGCTTGGGCTGGGGCTGCATATAATCTGCTACTGTATATGTTAGCTAGTCATGTCTTGGGGGCATCATGGTATATACTGTCAATCGAACGACATACAACATGCTGGAAATCAGAATGCAAAAAGGAAGTTAACCCTATAAAGTGCAGTTTGATATATTTAGACTGTGATACTTTCAACCATGATGATCGTAGGATTTGGGTGAACAGCACAGCTGTCTTCAATAACTGTGATCCTGACAATAAAATCACTTTCAACCATGGCATATTTGAAAATGCTGTGACTAATAAAGTTCTCTCCTCAAATTTCCTTGAGAAATACTTCTATTGTCTATGGTGGGGCCTACAGAACTTAAGTTCATATGGGCAGAATTTGACAACAAGCACGTTTATTGGGGAAACCTCATTTGCCATACTCATTGCCATTCTGGGTCTGGTTTTATTTGCCCATCTGATTGGAAACATGCAGACCTACCTGCAATCTATCACGGTGAGGCTTGAGGAGTGGAGACTTAAGAGAAGAGACACTGAAGAATGGATGAGACATCGGCAACTCCCTCAGGATTTGCGGGAACGTGTTCGGCGGTTTGTTCAATACAAGTGGCTAGCAACCCGTGGAGTAGATGAAGAAACTATCCTGCATGCCTTGCCTACAGATCTCCGTCGAGATATCCAACGCCACCTATGCTTGGACCTTGTTCGACGTGTCCCCTTTTTCTCACAGATGGATGACCAGCTTCTTGACGCCATATGTGAACGCCTAATATCCTCCTTAAGCACTGAAGGCACATACATTGTTCGTGAGGGTGACCCCGTAACGGAGATGCTCTTTATTATCAGAGGGAGACTAGATAGCTCTACTACCAATGGAGGCAGAACCGGTTTCTTCAATTCAATCACTTTGAGACCTGGTGACTTTTGTGGGGAGGAGCTGCTTGCATGGGCATTGCTTCCAAAATCAACGCTTAACTTGCCTTCTTCAACAAGGACAGTTAGAGCCCTTGTTGAAGTGGAAGCCTTTCTTTTGCGAGCAGAAGATCTCAAGTTTGTAGCCAATCAGTTTAGACGCCTCCACAGTAAGAAGCTGCAGCACACCTTCCGCTTCTACTCTCACCATTGGAGGACTTGGGCAGCATGCTTCATACAGGCTGCTTGGCGTCGGTTCAAGAGGAGGAGGTTGGCAAAGGACCTCCGCATGCTCGAGTCCTTCACCTTTGCTTCAGACGAACAAGTGGCCAACGAGACGGAACAAGAGGATGAAGAGGATTATGGTGCTGCCTCGGCAAATCCATCTCAGGCAAAACAAAACCTGGGGGTCACTATACTGGCCTCAAGATTTGCTGCAAGCACAAGGAGAGGAGCTCAGAAGATCAAAGCTGTTGAGATGCCCAAGTTACAAAAGCCTGAAGAGCCAGACTTCTCCACTGAGCTTGATGATGATGAGTAG 2262 0.4523 MYVSELDDSMELKKEKVVRFYPDGKQHLELPCEKPDSPNLEKPSPSPVYKVSAPLLKLDGGGGGGGGGGDGGGYRSRITETLKFGRSKVFSEDHEPWGQRILDPGSELVLQWNRVFLFSCLVALFVDPLYFYLPSMGVVRDSSCIKMDLNLRIVVTFFRTIADMLYLLHMVIKFRMAYVAPSSRVFGRGELVMDPKKIARRYLRSDFFIDLAATLPLPQIVIWFIIPAIRNTHSDHNNNALMLIVLLQYVPRLYLIFPLSSQIIKATGVVTKTAWAGAAYNLLLYMLASHVLGASWYILSIERHTTCWKSECKKEVNPIKCSLIYLDCDTFNHDDRRIWVNSTAVFNNCDPDNKITFNHGIFENAVTNKVLSSNFLEKYFYCLWWGLQNLSSYGQNLTTSTFIGETSFAILIAILGLVLFAHLIGNMQTYLQSITVRLEEWRLKRRDTEEWMRHRQLPQDLRERVRRFVQYKWLATRGVDEETILHALPTDLRRDIQRHLCLDLVRRVPFFSQMDDQLLDAICERLISSLSTEGTYIVREGDPVTEMLFIIRGRLDSSTTNGGRTGFFNSITLRPGDFCGEELLAWALLPKSTLNLPSSTRTVRALVEVEAFLLRAEDLKFVANQFRRLHSKKLQHTFRFYSHHWRTWAACFIQAAWRRFKRRRLAKDLRMLESFTFASDEQVANETEQEDEEDYGAASANPSQAKQNLGVTILASRFAASTRRGAQKIKAVEMPKLQKPEEPDFSTELDDDE* 754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl10g00016 753 ProSiteProfiles cAMP/cGMP binding motif profile. 510 593 IPR000595 -
Eupl10g00016 753 MobiDBLite consensus disorder prediction 682 704 - -
Eupl10g00016 753 Gene3D Helix hairpin bin 438 501 - -
Eupl10g00016 753 Pfam Cyclic nucleotide-binding domain 533 621 IPR000595 -
Eupl10g00016 753 Gene3D - 131 436 - -
Eupl10g00016 753 SUPERFAMILY Voltage-gated potassium channels 108 432 - -
Eupl10g00016 753 FunFam Cyclic nucleotide-gated ion channel 1 508 626 - -
Eupl10g00016 753 Gene3D Jelly Rolls 508 628 IPR014710 -
Eupl10g00016 753 FunFam Cyclic nucleotide-gated ion channel 1 437 501 - -
Eupl10g00016 753 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 91 745 - -
Eupl10g00016 753 CDD CAP_ED 510 641 IPR000595 -
Eupl10g00016 753 Pfam Ion transport protein 112 437 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Eupl10g00016 753 SUPERFAMILY cAMP-binding domain-like 440 632 IPR018490 -
Eupl10g00016 753 SMART cnmp_10 510 641 IPR000595 -
Eupl10g00016 753 MobiDBLite consensus disorder prediction 729 753 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl10g00016 Eupl-Chr10 3504825 3540416 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl10g00016 19 748 Ion Channels AT2G24610 68.657 0.0 1019
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl10g00016 K05391 - nnu:104605334 1224.54