Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl10g00015 ATCATTTCCCTCAAATCGAAATCAAAGAAGAAGGGCAATAACAGCACAGTTAGGTTTTCCCTGACTCGCGAGAGGCTCTTCTCCTCTGGCTTTTCTTTGTTTCTGCAGAAGCACTTATCTTCGCTCGCATCAGGTATCTTCGTAAAAATGTCTCGTGTATATGTGGGAAACGTGGATCCACGAGTAACTAAGCGAGAACTTGAAGATGAATTTCGTGTTTATGGAGTCTTGAGAAGTATATGGGTTGCACGAAAACCACCAGGTTACGCTTTTGTTGATTTTGATGACCGTAGGGATGCACTAGATGCAATTCGCGCACTGGATGGTAAAGATGGATGGAGAGTTGAGCTCTCTCATAACTCTGGAGGCAGGAGTGGTGGTGGCCGTCGTAGTGATGGTGGTCGTGGCCATTCTGGAAGTTCTGATCTTAAGTGCTATGAGTGTGGTGAGGCTGGTCATTTTGCTCGAGAATGCCGCTCGCGTGTTGGTTCTGGAAGACGTCGAAGCCGCAGCCCTAGATATCGCAGGAGTCCAAGCTATGGTCGAAGGAGCTACAGTCCTCGTGGGCGTTCTCCAAGGCGCCGCAGTGTCTCTCCTCGTCGGCGCAGCTATAGCAAGTCACCGCAGCATCACCGTGGACGTGAAGAATCACCATATGCTAACGGGTCTTGTAGGTTGGAACCATCTGGTGGTGTGTCTCGTCTCCCTGACTTTAGTACATATATGGGCCGTTCCATCGAAATGCTGTCAAAGATCGAAGCCGCAGCAGAAGCTGAATATTGGCTAAGCTGGAACTCAATTGTATTGAGAGAAAAAATGGACTAG 825 0.4873 IISLKSKSKKKGNNSTVRFSLTRERLFSSGFSLFLQKHLSSLASGIFVKMSRVYVGNVDPRVTKRELEDEFRVYGVLRSIWVARKPPGYAFVDFDDRRDALDAIRALDGKDGWRVELSHNSGGRSGGGRRSDGGRGHSGSSDLKCYECGEAGHFARECRSRVGSGRRRSRSPRYRRSPSYGRRSYSPRGRSPRRRSVSPRRRSYSKSPQHHRGREESPYANGSCRLEPSGGVSRLPDFSTYMGRSIEMLSKIEAAAEAEYWLSWNSIVLREKMD* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl10g00015 274 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 51 122 IPR000504 GO:0003723
Eupl10g00015 274 Gene3D - 47 121 IPR012677 -
Eupl10g00015 274 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 53 110 IPR000504 GO:0003723
Eupl10g00015 274 MobiDBLite consensus disorder prediction 159 228 - -
Eupl10g00015 274 Gene3D - 133 180 - -
Eupl10g00015 274 SUPERFAMILY RNA-binding domain, RBD 49 138 IPR035979 GO:0003676
Eupl10g00015 274 SMART c2hcfinal6 144 160 IPR001878 GO:0003676|GO:0008270
Eupl10g00015 274 FunFam Serine/arginine-rich splicing factor RSZ22A 141 200 - -
Eupl10g00015 274 SUPERFAMILY Retrovirus zinc finger-like domains 126 164 IPR036875 GO:0003676|GO:0008270
Eupl10g00015 274 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 51 212 - -
Eupl10g00015 274 CDD RRM_SRSF3_like 52 120 - -
Eupl10g00015 274 FunFam Serine/arginine-rich splicing factor 7 51 118 - -
Eupl10g00015 274 Pfam Zinc knuckle 144 159 IPR001878 GO:0003676|GO:0008270
Eupl10g00015 274 SMART rrm1_1 52 118 IPR000504 GO:0003723
Eupl10g00015 274 MobiDBLite consensus disorder prediction 187 208 - -
Eupl10g00015 274 MobiDBLite consensus disorder prediction 115 141 - -
Eupl10g00015 274 ProSiteProfiles Zinc finger CCHC-type profile. 144 160 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl10g00015 Eupl-Chr10 3480442 3489696 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl10g00015 44 110 Eukaryotic Initiation Factors Gene Family AT1G49760 38.028 5.83e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl10g00015 K12896 - msin:131217113 184.882