Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl09g01482 ATGTCAAGCTGCATCGATGTCCCGTCTGAGAAAGTCTGCTACATCCCTTGCAACTTTTGCAATATCGTTCTGGCGGTGAGTGTTCCATGCAGTAGCTTGTTCGACAACGTGACTGTTCGTTGCGGGCATTGTGCCAATCTATTGTCTGTGAACATGGCAGGAGCGTTCCAAACGCTGCCGTGGCAAGATCTCCAGACACCAAGCTTCGCTTCTTCGGATTCCAGGATCCATTTCGGCTCCTCTTCAAAATGCAATAAGATCTCAATGCTTCCATCGACTACTAATAACGAGGAAAGGATCATAAATCGTCCTCCAGAGAAGAGGCAGCGAGCACCTTCTGCCTATAATCAGTTCATAAAAGAAGAGATTCAGAGGATCAAGGCCAATAATCCCGATATCAGCCACAAGGAAGCATTCAGCACAGCAGCCAAAAATTGGGCACACTTTCCCCATATTCATTTTGGGTTGATGTTGGAGACCAACAATCAAGCTGAAATAGACGAGGGATCTGGGAGCCATCTAATGACAAAGGCTGCATTAGTAAACAAATGA 552 0.462 MSSCIDVPSEKVCYIPCNFCNIVLAVSVPCSSLFDNVTVRCGHCANLLSVNMAGAFQTLPWQDLQTPSFASSDSRIHFGSSSKCNKISMLPSTTNNEERIINRPPEKRQRAPSAYNQFIKEEIQRIKANNPDISHKEAFSTAAKNWAHFPHIHFGLMLETNNQAEIDEGSGSHLMTKAALVNK* 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl09g01482 183 CDD HMG-box_SF 110 146 - -
Eupl09g01482 183 Gene3D High mobility group box domain 101 152 IPR036910 -
Eupl09g01482 183 PANTHER PROTEIN YABBY 6-RELATED 1 165 IPR006780 GO:0007275
Eupl09g01482 183 SUPERFAMILY HMG-box 91 149 IPR036910 -
Eupl09g01482 183 Pfam YABBY protein 8 156 IPR006780 GO:0007275
Eupl09g01482 183 FunFam axial regulator YABBY 5-like 94 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl09g01482 Eupl-Chr9 31430910 31434305 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl09g01482 9 166 C2C2-YABBY Transcription Factor Family AT2G26580 70.625 3.61e-79 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Eupl09g01482 YABBY 4.4e-68 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl09g01482 K25796 - nnu:104595406 306.605