Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl09g01436 ATGTTCAGCCTCCGAATCCACTCGGTGGATACCAATCACAATCTCACCAGATCCATCGGAGAAGAGAGTGGCGCCACCGCAAATTCCGCCTCCACAAACCCTAACCCTAACGTCCAAGAACGCAGAGGCATCGTCCACCTCTACCGCAACGTCTCCCACCACTCCTCCTCCCTCTCATCAAACCTTAACCCCCAACACTCCACTCTTCTCTTCGTTCTCGCCGTTCCCAACCACCTCTCCTCCGAAGATTTCCTACGCTTCTGCGGATCCTACACCGACCACTTCTCGGAGATTCTCATCATCAGAAACGATGGGATGGAGGATCGGTACAGCGTGTTGATCAAGCTCGTTGATCAGAAGAGGGCTGATAGCTTCTATCGCAATTTCAACGGAAGGCGATTCTCATCCACCGAGGCTGAGGTTTGTCATGTCCTCTTTACGGTGTCCGTGGATTACACTGAATCAACAGAGGTTGCCAGTACACCTCCACCGGGGTTTACAGAATTACCTACTTGTCCCTTCTGCCTCGAGAGATTGGACCAGGACATAAGTGGAATTCTGACGACACTTTGTGACCATTCTTTCCAATGTCCTTGCATTTCAAAATGGACTGATTCGTCATGCCCGGTCTGTCGATTTTGTCAGCAGCAGGCCGAGAAACCAACATGCTCTGTTTGTGGAACATCAGAGAATCTCTGGATCTGTATAATCTGTGCTTTTGTAGGATGTGGAAGGTATAAAGAAGGTCATGCTATCAGGCATTGGAAAGATATCCAACATTGCTATTCTCTCGATTTAGAAACACAGCAAGTTTGGGATTATGTTGGTGATACTTATGTTCACCGATTAAATCAGTCAAAAACTGATGGCAAGTCAGTAGAATTGAACTCCCACTGTAGATCATTTGATGGAGATTGTGGGACTTGTGAATGCAGTGAAGATTCCGGAATTAGTGGGGCCTTCTTTAGCAGTAAAGTTGAAGTGATTGTGGATGAGTACAACCGTCTGCTTGCAAGCCAGCTGGAGAATCAGAGACAATATTACGAAGCACTAATTGTGGAGGCCAAAGGAAAAAGGGAGAAGTCCATTTCCGAAGCAATGGAGAAGGCTCTGAGTTCAAAGCTGCAGGAGATCCAACTTAAAATTGAAAAATGTGTTGAGGAAAAGAAGGTCGTCACTGATATCAATGAGAATCTTATGAAGAACCAAGAACTCTGGCGGAAGAATGCTAAGGAAATTGAGGAAAGGGAAAGATCATCACTAAGGTTGAGGGATGAGAAGATACTGGATCTGGAAGAGCAGATTAGAGATCTTACGGTCTATGTTGAAGCCCAGAGAACTCTTGATAAGATGACAGATTCAGATGACATCAAAGGAGGAACACTCTTACCAGTCCCATTGCAGCAATCTTCTCCAGCCAATACCAAAAAGCGCACAAAGACCAATAGAAGGCGCAATTAA 1461 0.4586 MFSLRIHSVDTNHNLTRSIGEESGATANSASTNPNPNVQERRGIVHLYRNVSHHSSSLSSNLNPQHSTLLFVLAVPNHLSSEDFLRFCGSYTDHFSEILIIRNDGMEDRYSVLIKLVDQKRADSFYRNFNGRRFSSTEAEVCHVLFTVSVDYTESTEVASTPPPGFTELPTCPFCLERLDQDISGILTTLCDHSFQCPCISKWTDSSCPVCRFCQQQAEKPTCSVCGTSENLWICIICAFVGCGRYKEGHAIRHWKDIQHCYSLDLETQQVWDYVGDTYVHRLNQSKTDGKSVELNSHCRSFDGDCGTCECSEDSGISGAFFSSKVEVIVDEYNRLLASQLENQRQYYEALIVEAKGKREKSISEAMEKALSSKLQEIQLKIEKCVEEKKVVTDINENLMKNQELWRKNAKEIEERERSSLRLRDEKILDLEEQIRDLTVYVEAQRTLDKMTDSDDIKGGTLLPVPLQQSSPANTKKRTKTNRRRN* 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl09g01436 486 CDD RRM_BRAP2_like 70 150 - -
Eupl09g01436 486 CDD RING-H2_BRAP2 170 213 IPR047243 -
Eupl09g01436 486 Coils Coil 338 358 - -
Eupl09g01436 486 MobiDBLite consensus disorder prediction 452 486 - -
Eupl09g01436 486 PANTHER BRCA1-ASSOCIATED PROTEIN 15 484 - -
Eupl09g01436 486 FunFam Zinc finger (Ubiquitin-hydrolase) domain-containing protein 194 300 - -
Eupl09g01436 486 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 187 299 IPR013083 -
Eupl09g01436 486 SMART Zf_UBP_1 222 271 IPR001607 GO:0008270
Eupl09g01436 486 ProSiteProfiles Zinc finger RING-type profile. 172 212 IPR001841 -
Eupl09g01436 486 ProSiteProfiles Zinc finger UBP-type profile. 206 299 IPR001607 GO:0008270
Eupl09g01436 486 Pfam Zn-finger in ubiquitin-hydrolases and other protein 223 283 IPR001607 GO:0008270
Eupl09g01436 486 SMART ring_2 172 211 IPR001841 -
Eupl09g01436 486 SUPERFAMILY RING/U-box 188 287 - -
Eupl09g01436 486 Pfam BRCA1-associated protein 2 64 159 IPR011422 -
Eupl09g01436 486 Coils Coil 368 388 - -
Eupl09g01436 486 Coils Coil 396 416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl09g01436 Eupl-Chr9 29512822 29527831 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl09g01436 165 225 C3H Transcription Factor Family AT5G17600 36.508 9.10e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl09g01436 K10632 - nnu:104586114 713.375