Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl09g01353 ATGGCGGAACAGACGGAGAAGGCGTTCTTGAAGCAGCCGAAGGTGTTTTTATGCTCAAAGAAATCCGGGAAGGGGAAGAGGCCTGGGAAGGGTGGGAACCGCTTCTGGAAGAGTATTGGATTGGGCTTCAAGACGCCCAGAGAGGCAAGTGAAGGGACATATATTGATAAGAAATGCCCATTTACTGGCAATGTTTCTATCAGGGGCCGTATCCTGGCAGGCACTTGCCACAGTGCCAAGATGATGAGGACCATCATTGTCCGAAGAAACTACCTTCACTTTGTTAAGAAATACCAAAGATATGAGAAGAGGCATTCTAACATCCCAGCACACACATCCCCTTGCTTCCGTGTGAAGGAAGGAGACCATGTTATCATTGGCCAGTGCAGGCCATTGTCAAAAACAGTGAGGTTCAATGTGTTGAAAGTGATTCCAGCTGGATCTTCTGGTGGAGGCGGGAAGAAGGGTTTTACAGCCATCTAG 483 0.4845 MAEQTEKAFLKQPKVFLCSKKSGKGKRPGKGGNRFWKSIGLGFKTPREASEGTYIDKKCPFTGNVSIRGRILAGTCHSAKMMRTIIVRRNYLHFVKKYQRYEKRHSNIPAHTSPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGGGKKGFTAI* 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl09g01353 160 Pfam Ribosomal_S17 N-terminal 4 72 IPR032440 -
Eupl09g01353 160 FunFam 40S ribosomal protein S11 1 159 - -
Eupl09g01353 160 ProSitePatterns Ribosomal protein S17 signature. 121 133 IPR019979 GO:0003735|GO:0005840|GO:0006412
Eupl09g01353 160 NCBIfam 30S ribosomal protein S17 53 143 IPR028333 -
Eupl09g01353 160 PRINTS Ribosomal protein S17 family signature 121 131 IPR000266 GO:0003735|GO:0005840|GO:0006412
Eupl09g01353 160 PRINTS Ribosomal protein S17 family signature 131 138 IPR000266 GO:0003735|GO:0005840|GO:0006412
Eupl09g01353 160 PRINTS Ribosomal protein S17 family signature 88 111 IPR000266 GO:0003735|GO:0005840|GO:0006412
Eupl09g01353 160 Pfam Ribosomal protein S17 74 142 IPR000266 GO:0003735|GO:0005840|GO:0006412
Eupl09g01353 160 PANTHER 40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER 10 149 IPR000266 GO:0003735|GO:0005840|GO:0006412
Eupl09g01353 160 SUPERFAMILY Nucleic acid-binding proteins 68 147 IPR012340 -
Eupl09g01353 160 Gene3D - 1 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl09g01353 Eupl-Chr9 27172223 27179015 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl09g01353 1 160 Cytoplasmic Ribosomal Protein Gene Family AT3G48930 89.375 4.04e-95 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl09g01353 K02949 - vvi:100265421 289.656