Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl09g01344 ATGTTAGAGACAAAGAAAACATGCTTCAGAAGAAGCAAGGGGGGCTATGATAAACTGTCAATTCTGAAGAAAGAAAGAGACACTGAAGGTTACAGTACTGTCATACAAAATGAAGTGGAGCCTGGCACTTCTCTGTTTGAGACAAAGAAAGCATGTTTCAGTCAAACTGAAGTATGCGCGGATGAATTGTCCATGTTAAAAAGAGAGAGAGACAATGGTGGCCACAGAATATTAAAGAACAATATTCTACACAGCTTTTCTAGTGCTCGATTGAAGTCAAGATTTAATGAAGGTCGCAAGCGCAGCCTTTATGAGATAGCAGGGAAAGGGAAGAATCCCAGTTCTGCAAAGTTTTGTCTTTCAAAAATTTCGAAATGCACTCTACGGACCAAAATCAGATCTCATGGAAAGTCTTGTTTCAAGAAAGCCGATGGTCAATGTCACACAGGTGCATTATTTCAAGCAAATGCCAAGAAATCTATTAAAGAACGCAAGTACCAGACCTTTATTTTGGATTCAGATGCATTTTGCTGTGTTTGTGGAAGCTCAAATAAAGATGAAATTAATTGTTTATTAGAGTGCAGTCGCTGCTTAATCAGAGTGCACCAAGCTTGCTATGGTGTTTCCAAAGTACCCAAAGGTCGTTGGTGTTGCAGACCATGCAGGACAAATTCTAAAGACACCGTTTGTGTTATCTGTGGTTACGACGGCGGGGCAATGACACGGGCACTGAGGAGTCGGAATATTGTGAAAAGCCTTTTGAAGGGTTGGAACATTGAAGCGGAATCCAAGTCTAAGAATTCCATTCCCCTGTTTGAAACTTTAAAGGATGAGTTGAGCTTATTGGGTCATTCAGGATCTGGATGTGAAACCGATTTAGTTCCTGCTGTAACACCTGTAACTGAAGAGTCTCCCACAGCTGTGTTGAAAGAAGATTTGCATGACCAAACAAATGTTATAAAGAATTCACATCGTTTACCAAGTAATTTCCAAGTACATAACACCATAACTGCAGTAGTACTTGATCCGACTATTACGCAGTGGGTGCATATGGTTTGTGGACTCTGGACGCCAGGGACACGATGTCCAAATGTTGACACTATGAGTGCTTTTGACGTATCGGGTGCTTCACATCCCAAAAAGAATGTGGTTTGTTCAATGTGTAACCGACCAGGGGGCTCATGTATAGAGTGCAGGGTTGTGAATTGTTCTGTCCATTTTCATCCTTGGTGTGCACACCAGAAGGGTTTATTGCAAAGTGAGGTTGAAGGTGTTGATAATGAAAAGGTTGGGTTTTATGGCAGATGCATGCTTCATGCAACACATCATAGGTGTGACTCAGACAGTCGTCCCGTTGATACTAAAATTGATAGTCCAGGAAGAGGGGAGTTAACATGTGCACGAACAGAGGGTTACAAAGGTCGCAAAAGGGACGGGTTCAGGCATGATCTTCATGGGCAGTCTAATGACCATGTTGGATGCCTTGTTCCTCAAGAACAGATAAATGCATGGCTTCACATCAATGGGCAAAAGTCATGCACAAGAGGGCTTCTAAAGCCACATGCTTCAGATATTGAGTATGATTGCCGGAAAGAATATGCTCGTTACAAACAAGCAAAGGGGTGGAAGCATTTGGTAGTCTACAAATCTGGGATACATGCCCTTGGTCTTTACACGTCTCGGTTCATATCCCGTGGTGCAATGGTTGTTGAGTATGTTGGTGAGATAGTGGGACTCCGTGTTGCTGATAAACGAGAAATTGAGTATCAGTCGGGAAGAAAACTTCAGTACAAGAGTGCTTGCTACTTCTTTAGGATTGATAAAGAGCATATTATTGATGCTACCCGCAAAGGTGGGATTGCTCGATTTGTCAACCATTCATGCCTGCCAAACTGCGTCGCCAAAGTAATTTCCGTGAGGAATGAAAAGAAGGTTGTTTTCTTTGCAGAGAGGGATATAAACCCCGGGGAGGAGATAACATATGATTACCATTTTAACCATGAGGATGAAGGTAAGAAAATCCCATGCTTTTGCAATTCGAAAAATTGTAGGCGTTACTTGAACTAG 2067 0.4214 MLETKKTCFRRSKGGYDKLSILKKERDTEGYSTVIQNEVEPGTSLFETKKACFSQTEVCADELSMLKRERDNGGHRILKNNILHSFSSARLKSRFNEGRKRSLYEIAGKGKNPSSAKFCLSKISKCTLRTKIRSHGKSCFKKADGQCHTGALFQANAKKSIKERKYQTFILDSDAFCCVCGSSNKDEINCLLECSRCLIRVHQACYGVSKVPKGRWCCRPCRTNSKDTVCVICGYDGGAMTRALRSRNIVKSLLKGWNIEAESKSKNSIPLFETLKDELSLLGHSGSGCETDLVPAVTPVTEESPTAVLKEDLHDQTNVIKNSHRLPSNFQVHNTITAVVLDPTITQWVHMVCGLWTPGTRCPNVDTMSAFDVSGASHPKKNVVCSMCNRPGGSCIECRVVNCSVHFHPWCAHQKGLLQSEVEGVDNEKVGFYGRCMLHATHHRCDSDSRPVDTKIDSPGRGELTCARTEGYKGRKRDGFRHDLHGQSNDHVGCLVPQEQINAWLHINGQKSCTRGLLKPHASDIEYDCRKEYARYKQAKGWKHLVVYKSGIHALGLYTSRFISRGAMVVEYVGEIVGLRVADKREIEYQSGRKLQYKSACYFFRIDKEHIIDATRKGGIARFVNHSCLPNCVAKVISVRNEKKVVFFAERDINPGEEITYDYHFNHEDEGKKIPCFCNSKNCRRYLN* 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl09g01344 688 CDD SET_SETD1-like 545 684 - -
Eupl09g01344 688 SMART set_7 543 670 IPR001214 GO:0005515
Eupl09g01344 688 FunFam Histone-lysine N-methyltransferase 452 688 - -
Eupl09g01344 688 Pfam PHD-finger 189 222 - -
Eupl09g01344 688 SMART PHD_3 384 440 IPR001965 -
Eupl09g01344 688 SMART PHD_3 176 222 IPR001965 -
Eupl09g01344 688 PANTHER HISTONE-LYSINE-N-METHYLTRANSFERASE 2 KMT2 FAMILY MEMBER 78 688 - -
Eupl09g01344 688 ProSiteProfiles Extended PHD (ePHD) domain profile. 304 440 IPR034732 -
Eupl09g01344 688 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 160 229 IPR013083 -
Eupl09g01344 688 ProSiteProfiles Zinc finger PHD-type profile. 174 224 IPR019787 -
Eupl09g01344 688 CDD ePHD 346 430 - -
Eupl09g01344 688 SMART PostSET_3 672 688 IPR003616 -
Eupl09g01344 688 FunFam Histone-lysine N-methyltransferase ATX4 160 237 - -
Eupl09g01344 688 Gene3D SET domain 455 688 IPR046341 -
Eupl09g01344 688 Pfam PHD-zinc-finger like domain 346 426 - -
Eupl09g01344 688 ProSitePatterns Zinc finger PHD-type signature. 177 221 IPR019786 -
Eupl09g01344 688 ProSiteProfiles SET domain profile. 543 664 IPR001214 GO:0005515
Eupl09g01344 688 Pfam SET domain 556 663 IPR001214 GO:0005515
Eupl09g01344 688 ProSiteProfiles Post-SET domain profile. 672 688 IPR003616 -
Eupl09g01344 688 SUPERFAMILY FYVE/PHD zinc finger 164 226 IPR011011 -
Eupl09g01344 688 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 327 443 IPR013083 -
Eupl09g01344 688 SUPERFAMILY SET domain 535 684 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl09g01344 Eupl-Chr9 27017260 27042393 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl09g01344 545 688 C2H2 Transcription Factor Family AT2G23740 33.537 1.05e-15 79.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Eupl09g01344 SET 3.4e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl09g01344 - - nnu:104588505 1048.11