Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl09g01334 ATGGGTTCGAGCAGCAGTCGTTTGGGCTCGCGCCCTTCTCGCCCCCGAGTCAACCGCCCCAAGCGCAGACTCTCCTCTTTCATCTGTGGTGGCTCCACTTCTTACGCTCCGGTTGAGGAGATGGAAGATTATCCGGCTGAATTATTGACGAGTTCTGCAGAAGATCGTGATCCCATTGTTATTAATGAACTCCAGAGCTCAACGCAGGAACCCTCTTCAATATTTTTTTCAGAAACAGAGTGTTCCAGTTCCACAACTGAAAATGGAGCATCATCTGAGAGCAGTAATGGTACGGTTGAGGAATCTTCTACAGAATATCGTTCAAGATGTGTTGAAAAAAATAATGAAGGGAAATGCTTGTCTGAAAGTAAGGAATTAGTTCCTTGCCAGGCAAATGCTGATTATAGTCCAATAGAGTCTTATTGGGCAAGAAGAAGTGACATAGCTAGTAGCTCCTCTAAAGAACAACTATCTCTAGAGTCACTGTCTGTAAATGTAGGGTCTAGCTTGGATGCTGTTGTTGAGGTCAATGATTCTAAAAATGAGGGTGCATCCCAGGCTTGTCTGGAAGGGGTATGTTCAAGCAGTACGTCTCATCAGGGACTTGGAGATTCATGTTCAGATGGGGTGTTGCCTATCGAAAATCATGCAAACGAAATTCTGGGCATCCATAACACTGATCCCACCTCTGTTCCTGTTGTTTCGGATTCATCACTAGCTTGGCAGTCACTAGGAGAAGAATCTGCTCAAGAGGCAGCACCTCCAGGTCCAGGATTCCTCATGTCAGATAGGCAACAAGACAGGAGAAATGGAAGTGTACTTCATGTTGATGTGGTGACTATCTCTTCCAACATTTTATCAAGTAGCACTGGGGAAGTAAGTAACCGTGACGCAAGAAGGAATAGTAGAAGGCTATTTTGGGATGCTTTTTCAAGGCGCAGTTCTAGAAGGCATAGTGATTCCCCAGCAATAGTTTTCTCAACTGAGGATACTGATGATCTGGGAGCTCATGACAGATGGCTACTTGATTTCAGTGGTGATTTCTTTGAGGATGAAGTTGGAGGAGATTCAGGGTATCTGAGCAGTAGAAGTCATGGCATGTATGGAAGGCGATGGCATTCGAGATCTGAGATCTGGGAACGACTTCGTGGTGGCCTTGATGAAAGTAGTCGACGAACTACTTTTTGTGCATCTGGGCTACACCCTGATGGTACATGCTCGTGTGAGTCATTCTTGATGGCAGAAGAGTCGGGTACTCGTGCAAGTATTTCACGTATAGTCATGCTTGCTGAGGCCTTATTTGAGGTCTTGGATGAAATTCATCGGCAACCTGTGTCACTTTCGCTATCAATGGTTTCACTTCCAGCTCCAGAATCCATTGTTAATTCTTTTCCTCTCAAGAGTCACAAAAAGCCTAATGCAGCTGAAAGTGGAAATGATGTGGAACAGTGTTATATTTGCCTAGCTGAGTATGAGGAGGGGGATAAAATAAGAGTCCTGCCCTGCCGCCATGAATACCATATGTCCTGTGTTGATAAATGGCTCAAAGAAATACACGGGGTGTGCCCACTCTGCCGCGGGGATGTTTGTGAGGGTGTTGCTGAGGGATCCATCTCAAGCTCGTAA 1626 0.4551 MGSSSSRLGSRPSRPRVNRPKRRLSSFICGGSTSYAPVEEMEDYPAELLTSSAEDRDPIVINELQSSTQEPSSIFFSETECSSSTTENGASSESSNGTVEESSTEYRSRCVEKNNEGKCLSESKELVPCQANADYSPIESYWARRSDIASSSSKEQLSLESLSVNVGSSLDAVVEVNDSKNEGASQACLEGVCSSSTSHQGLGDSCSDGVLPIENHANEILGIHNTDPTSVPVVSDSSLAWQSLGEESAQEAAPPGPGFLMSDRQQDRRNGSVLHVDVVTISSNILSSSTGEVSNRDARRNSRRLFWDAFSRRSSRRHSDSPAIVFSTEDTDDLGAHDRWLLDFSGDFFEDEVGGDSGYLSSRSHGMYGRRWHSRSEIWERLRGGLDESSRRTTFCASGLHPDGTCSCESFLMAEESGTRASISRIVMLAEALFEVLDEIHRQPVSLSLSMVSLPAPESIVNSFPLKSHKKPNAAESGNDVEQCYICLAEYEEGDKIRVLPCRHEYHMSCVDKWLKEIHGVCPLCRGDVCEGVAEGSISSS* 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl09g01334 541 FunFam Putative RING zinc finger domain superfamily protein 451 531 - -
Eupl09g01334 541 MobiDBLite consensus disorder prediction 244 264 - -
Eupl09g01334 541 MobiDBLite consensus disorder prediction 1 107 - -
Eupl09g01334 541 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 1 541 - -
Eupl09g01334 541 MobiDBLite consensus disorder prediction 61 104 - -
Eupl09g01334 541 SUPERFAMILY RING/U-box 477 531 - -
Eupl09g01334 541 ProSiteProfiles Zinc finger RING-type profile. 484 526 IPR001841 -
Eupl09g01334 541 SMART ring_2 484 525 IPR001841 -
Eupl09g01334 541 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 449 531 IPR013083 -
Eupl09g01334 541 Pfam Ring finger domain 483 526 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl09g01334 Eupl-Chr9 26760451 26769337 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl09g01334 398 530 C3H Transcription Factor Family AT5G45290 53.741 2.23e-41 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl09g01334 - - ming:122068977 689.878