Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl09g01331 ATGGCGTTCCACAACCATCTCTCTCACGAGATGGCGCTTCAGCATTTCACAGAACAGCATTTAGGAGAAAACACGGCAGTTTTACGGAGTATATTACCGGAACAACTCGGTCAGTCTTCATCAGACGCCACCGCTGGTGGTGCACGAAAACAACAACAACAAAAAGATATACAACGTTTAATGATTGAAACAGCCGGAAAACCACCTCAACCACCATCTCAACAACCGCAACACCAGCTTGGTGGTGGGCCCACATGGCTCAACAACGCAATTCTCAGACAACAAAACCAATACGTTGACGGTAGTTTCCTGCACCTACAGACCAATTCAGACTCCACGACCATGATCGCCGCCGCGATATCTCACGGCTCAGCTGACTTGACCACCAACAACGATAGCAGCAACGGAAACAATGGGACTAATCCGAACCAGGGTGACAATAGCGTAGGTGGCCTGGATTTAGCAGAGAGTGAAGCGGGTGGAGGAGGAGGGGATGGAGTGGGTACTTGGCAGAACGCGAGGTATAAAGCTGATATCTTGGCGCACCCGTTGTATGAGCAGTTGCTTTCTGCGCATGTCTCTTGCTTGCGCATTGCGACTCCGGTCGATCAGTTGCCTCGGATCGATGCTCAGCTTGGGCAATCGCAGCATGTCGTCGCAAAGTATTCGGTTCTTGGACATGGTAATCAGCTGCTTGTTGGCGACGATAAGGAGCTCGATCAGTTCATGACCCATTATGTTCTATTGCTTTGTTCCTTTAAAGAACAGCTACAACAACATGTTCGTGTGCATGCAATGGAAGCAGTAATGGCTTGCTGGGATCTTGAGCAATCTCTACAGAGCATAACAGGTGTCTCTCCGGGTGAAGGTACAGGTGCAACTATGTCAGATGACGACGACGAACAGGCAGATAGTGACACCAACTTGTATGATGGAAGCTTGGAGGGAGCAGACAGCATGGGGTTTGGTCCTCTCATCCCAACCGAGAGTGAGAGGACCTTGATGGAGCGTGTGAGGCAAGAGCTGAAACACGAGCTGAAACAGGGTTACAAGGAGAAGATTGTCGACATAAGGGAGGAGATTCTTCGTAAGAGACGAGCAGGAAAACTCCCAGGGGACACCACCTCCCTCTTAAAGGCTTGGTGGCAGTCACATTCCAAGTGGCCATACCCAACTGAGGAAGACAAGGCAAGGCTAGTGCAGGAAACAGGATTGCAATTAAAGCAGATTAATAACTGGTTCATCAACCAGAGGAAGAGGAACTGGCATAGTAACCCTTCATCTTCTACAGTTCTAAAAAGCAAACGCAAGAGAAGTAATGCAGGTGAAAACAGTGGTGAACGCTTCATATAG 1353 0.4908 MAFHNHLSHEMALQHFTEQHLGENTAVLRSILPEQLGQSSSDATAGGARKQQQQKDIQRLMIETAGKPPQPPSQQPQHQLGGGPTWLNNAILRQQNQYVDGSFLHLQTNSDSTTMIAAAISHGSADLTTNNDSSNGNNGTNPNQGDNSVGGLDLAESEAGGGGGDGVGTWQNARYKADILAHPLYEQLLSAHVSCLRIATPVDQLPRIDAQLGQSQHVVAKYSVLGHGNQLLVGDDKELDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWDLEQSLQSITGVSPGEGTGATMSDDDDEQADSDTNLYDGSLEGADSMGFGPLIPTESERTLMERVRQELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSLLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSSSTVLKSKRKRSNAGENSGERFI* 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl09g01331 450 Pfam Homeobox KN domain 381 420 IPR008422 GO:0003677|GO:0006355
Eupl09g01331 450 MobiDBLite consensus disorder prediction 284 304 - -
Eupl09g01331 450 SUPERFAMILY Homeodomain-like 363 427 IPR009057 -
Eupl09g01331 450 SMART KNOX1_2 173 217 IPR005540 GO:0003677|GO:0005634
Eupl09g01331 450 Pfam KNOX2 domain 233 283 IPR005541 GO:0003677|GO:0005634
Eupl09g01331 450 ProSiteProfiles ELK domain profile. 341 361 IPR005539 GO:0003677
Eupl09g01331 450 Pfam KNOX1 domain 175 215 IPR005540 GO:0003677|GO:0005634
Eupl09g01331 450 ProSiteProfiles 'Homeobox' domain profile. 361 424 IPR001356 GO:0003677
Eupl09g01331 450 MobiDBLite consensus disorder prediction 421 450 - -
Eupl09g01331 450 CDD homeodomain 364 425 IPR001356 GO:0003677
Eupl09g01331 450 FunFam homeobox protein knotted-1-like 3 isoform X1 362 423 - -
Eupl09g01331 450 MobiDBLite consensus disorder prediction 127 165 - -
Eupl09g01331 450 SMART ELK_2 341 362 IPR005539 GO:0003677
Eupl09g01331 450 SMART KNOX2_2 229 284 IPR005541 GO:0003677|GO:0005634
Eupl09g01331 450 MobiDBLite consensus disorder prediction 64 86 - -
Eupl09g01331 450 MobiDBLite consensus disorder prediction 127 150 - -
Eupl09g01331 450 MobiDBLite consensus disorder prediction 421 435 - -
Eupl09g01331 450 Gene3D - 362 423 - -
Eupl09g01331 450 SMART HOX_1 363 428 IPR001356 GO:0003677
Eupl09g01331 450 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 192 429 - -
Eupl09g01331 450 Pfam ELK domain 341 362 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl09g01331 Eupl-Chr9 26694947 26725266 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl09g01331 84 438 Homeobox Transcription Factor Family AT5G25220 70.833 0.0 524
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Eupl09g01331 KNOX2 2e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl09g01331 - - ming:122086517 729.169