Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl09g01300 ATGGCCAGACCACAGCAACGATATCGAGGCGTTCGTCAGAGGCATTGGGGCTCCTGGGTCTCCGAAATTCGCCACCCTTTATTGAAGACTAGAATCTGGCTAGGCACGTTCGAAACTGCCGAGGACGCGGCTCGAGCCTATGACGAAGCGGCTAGACTCATGTGCGGACCAAGAGCGAGAACCAACTTCCCTTACAACCCCAATGCGTCTGATTCCTCTTCCTCCAAGTTTCTCTCTGCAACTTTGACTGCAAAATTACATCGTTGCCACTTGGCATCTCTCCAAGTGACACGACCCGTCATCAAAGAGCCACAAAGGGCTGCTCCATCTCCAGTAATTTCCGCCGGAAATAATGGCATTGCCGGAAAATCTGACGAAAAGGGTGTGTGGCAACCGCCCAAGAAACCACCCATAGTTCCACAGGCGGAGACGAATTGGGTAACGATGAAATCGCAAATTGAGACTACCCAGCAATTCAAACCTCTTGAAGATGATCATATAGAGCAGATGATAGAAGAATTGCTGAATTCTGGACCTGTCGAGCTCTGCTCAGGCTCTGTAGTTTAG 567 0.5026 MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPYNPNASDSSSSKFLSATLTAKLHRCHLASLQVTRPVIKEPQRAAPSPVISAGNNGIAGKSDEKGVWQPPKKPPIVPQAETNWVTMKSQIETTQQFKPLEDDHIEQMIEELLNSGPVELCSGSVV* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl09g01300 188 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Eupl09g01300 188 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Eupl09g01300 188 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Eupl09g01300 188 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Eupl09g01300 188 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Eupl09g01300 188 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
Eupl09g01300 188 CDD AP2 6 66 IPR001471 GO:0003700|GO:0006355
Eupl09g01300 188 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677
Eupl09g01300 188 FunFam Ethylene-responsive transcription factor 2 6 65 - -
Eupl09g01300 188 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 6 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl09g01300 Eupl-Chr9 25966150 25967226 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl09g01300 1 184 AP2-EREBP Transcription Factor Family AT5G25190 62.903 7.98e-75 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Eupl09g01300 AP2 7.9e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl09g01300 - - nnu:104589060 279.256