Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl09g01288 ATGACAGTCGAGGAAAGACGGGGAAGTATCGGTGAGGATGAACCGAAAGATCAGTTTCCGGTGGGTATGCGTGTTCTAGCCGTCGATGATGATCTCACTTGCCTGCGCGTGTTGGAGAGTCTGCTCCGTCGATGCGAGTATCATGTTACGACTACTACTCAGGCAATTATGGCGCTAAAGATGTTGAGAGAGAACAAAAATAAGTTCGATTTGGTTATCAGTGATGTTCATATGCCAGACATGGATGGGTTTAAGCTTCTGGAGCTTGTGGGGCTTGAGATGGACCTACCTGTCATAATGTTGTCGGGACATAGCGACCCCAAACTTGTGATGAAGGGGATTACCCATGGTGCTTGTGACTATTTGCTGAAACCTGTTCGAATTGAGGAGCTCAAGAACATCTGGCAACATGTAATCAGGAGGAAGAAGTTTGATTCCAAGGACCCAAATAACGCTGACAATCCAGAGAAGCCTAATCAGGGAACGGGAGAAGGTGGACAAGGGTCCACAACGTCTGGACATGCTGATCGGAATGGGAAACTCAACAGGAAACGGAAGGACCAGAATGAAGACGAGGACGAGGAGAGCGAGGAGAATGGGCAGGAGGACGACGACCCATCAACCCAGAAGAAGCCTCGTGTTGTTTGGTCTGTGGAGCTGCACCGCAAGTTTGTTGCGGCTGTTAATCAATTGGGCATTGATAAGGCTGTACCTAAGAAAATACTAGACCTGATGAATGTTGACAGGCTTACTCGAGAAAATGTGGCAAGCCATCTTCAGAAATATAGGCTTTACCTGAAAAGGATCAGTTGTGTGGCAAGCCAGCAAGCTAACATGGTTGCTGCTTTAGGGGGTAAAGATTCCTCCTATTTGCGCATGGGTTCATTTGATGGACTTGGCGATTTTCATGCCTTGACAGGATCAGGCGATTTCCATGCCTTGACAGGATCAGGGCAGCTTCAAAATGCTGCTCTTTCATCCTTCCCACATGGTGGGATGTTTGGTAGATTGAACACCCCTGCTGGTTTGGGCCTTCGTGGGCTTGCTTCTTCTGGAATGATCCAAATGGGTCGGGCCCAAAACTCCAGCAACTCCATCAATGATCTCGGGAAGCTGCAGCAGGTCATCCTACCTGGAAACCAAAATGGGAATTTACTTAAAGGGATTCCAACATCATTGGAACTCGACCAATTGCAACAGAACAAGTGCATTTCTCGCATTGGAGAGTTCTCCTCCCCCATCGACGATCCGACAATTTTCCCACTTGCTAGTGGCTTCCCAGACACCGGAGTGACCATTGGTAGCTCAAGCAACTCTTTTCTCAATGTCTCAAACAACCCCTTGTTGTTACAGGGACACCCACAACAGGCACAAAGTCGGGTAGGTTTGGGAAATCAATCTTCTGTTAGAATGGCACCACTTAACTCGGAACCTTTTGAGATTGGAGTTGGTATATCTTCTCATTTGCCTGATCACGGTAGATGTAACGACAACTGGCAAGGTGCCGTTCCACTGACTGGGTTTCCATCAAATCCTTTGCCAATGGGTGACCCTTTTAATCATGGTGATTTGTCTTCTAATAACTTGAGAGAGAATAATTCTTCAATGGCCCCACATATTGGGAGCAACTCACTTGATATTTCCCCCACCAGTGTAGTACCGACTTCTCTTCAGGCCTCAAGAAGAGATGCACTATGCCAAGTAGGTCCAATTGGTGTTAATATTCAGCATGATAACCCGAAGGTGTCAAACTTTGGAAGCATGGGTAATAGTGTTGGCCAGAATATGAACTACGCCCCGAAGCATAGAAGGGAAGACCATAAGCAGGACTACACCCACAACTCAAATCTTATTTTCAATTCTTTAAACCCTTCGGTGCCAATGCATGGTTTCATGGGTCCCTTGGGCCAGAATTTAGGCCAAGACAATACAGTCTGCAATGGAAAGATGGATGTGAGTCTGATTGGCCAATCAAATTGTGGTACTCCGTATCTCATGCAGCATAACGGGGTTGGGAAATCGGCTATGGATGCAAAGATGGGACTGAAGGAAGAGTACCTCTTGGAGCAAACTAAGTCGCAGAGCGGGCTCATGCCTAATAGTTGCGGGTCGTTAGAAGATCTAATGAGTGCAATGATTAAACGGGAACAAGAGGAGGTTATGTTAATGGAAGGAGACATTGGATGTGATATTTACCCCCTCGGAACATGTATGTGA 2217 0.4677 MTVEERRGSIGEDEPKDQFPVGMRVLAVDDDLTCLRVLESLLRRCEYHVTTTTQAIMALKMLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSGHSDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKKFDSKDPNNADNPEKPNQGTGEGGQGSTTSGHADRNGKLNRKRKDQNEDEDEESEENGQEDDDPSTQKKPRVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVDRLTRENVASHLQKYRLYLKRISCVASQQANMVAALGGKDSSYLRMGSFDGLGDFHALTGSGDFHALTGSGQLQNAALSSFPHGGMFGRLNTPAGLGLRGLASSGMIQMGRAQNSSNSINDLGKLQQVILPGNQNGNLLKGIPTSLELDQLQQNKCISRIGEFSSPIDDPTIFPLASGFPDTGVTIGSSSNSFLNVSNNPLLLQGHPQQAQSRVGLGNQSSVRMAPLNSEPFEIGVGISSHLPDHGRCNDNWQGAVPLTGFPSNPLPMGDPFNHGDLSSNNLRENNSSMAPHIGSNSLDISPTSVVPTSLQASRRDALCQVGPIGVNIQHDNPKVSNFGSMGNSVGQNMNYAPKHRREDHKQDYTHNSNLIFNSLNPSVPMHGFMGPLGQNLGQDNTVCNGKMDVSLIGQSNCGTPYLMQHNGVGKSAMDAKMGLKEEYLLEQTKSQSGLMPNSCGSLEDLMSAMIKREQEEVMLMEGDIGCDIYPLGTCM* 739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl09g01288 738 PIRSF RR_ARR_type-B 1 738 IPR017053 GO:0003677|GO:0003700|GO:0009736
Eupl09g01288 738 MobiDBLite consensus disorder prediction 153 176 - -
Eupl09g01288 738 Pfam Response regulator receiver domain 25 133 IPR001789 GO:0000160
Eupl09g01288 738 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 208 267 IPR017930 -
Eupl09g01288 738 Gene3D - 22 156 - -
Eupl09g01288 738 Gene3D - 207 270 - -
Eupl09g01288 738 NCBIfam myb-like DNA-binding domain, SHAQKYF class 211 264 IPR006447 GO:0003677
Eupl09g01288 738 SUPERFAMILY CheY-like 22 145 IPR011006 -
Eupl09g01288 738 ProSiteProfiles Response regulatory domain profile. 24 139 IPR001789 GO:0000160
Eupl09g01288 738 SUPERFAMILY Homeodomain-like 208 268 IPR009057 -
Eupl09g01288 738 MobiDBLite consensus disorder prediction 145 211 - -
Eupl09g01288 738 PANTHER TWO-COMPONENT RESPONSE REGULATOR 23 381 IPR045279 GO:0009736
Eupl09g01288 738 FunFam Two-component response regulator 207 270 - -
Eupl09g01288 738 Pfam Myb-like DNA-binding domain 213 263 IPR001005 -
Eupl09g01288 738 CDD REC_typeB_ARR-like 25 139 - -
Eupl09g01288 738 SMART REC_2 23 135 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl09g01288 Eupl-Chr9 25618517 25625484 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl09g01288 1 455 Response Regulator Gene Family AT2G25180 54.762 7.49e-143 430
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Eupl09g01288 Response_reg 2.6e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl09g01288 K14491 - nnu:104610687 1041.18