Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl09g01283 ATGGCTGATGAAGAGCCAAAGCCCCTCAAATATGTCCCAGAAATTGTGCTGAAGAAAAGAAAAAGTAATGAAGATTGGGCAATTAAAAGGAGAGAACAATTGGAACAGCGGAAGCAGAAGAGCAAACAAAATCGAACACTCATCTTCAAAAGGGCTGAGCAATACATCAAAGAACACCGAAGTAAAGAGCTGGACCTTATCCAAATGAAACAGAGGAAAAAGCTGCGAAGATCACTAAATATCAATCCTGAATCTAAGCTGCTTTTCATCATTCGCATTTCTGGCACAAATGATATGCATCCGAAGACCAGGAAAATTTTACACCTTTTGAGGTTGAGGAGGATCTTAAGTGGGGTCTTCGTGAAGGCAAATGAAGGGATTATGGATATGCTGCGGAGGGTGGAACCATATGTGACATATGGATATCCTAATCTGAAGAGTGTGAGGGAGTTGGTTTACAAGCAGGGCTATGGAACGATAGACAAGCAGAGGGTTCCCCTCACAGACAACAACATTATTGAACAGGCACTTGGAAAGTATGGTATTATATGCATTGAAGATATTGTACACGAGATTGCTACCGCCGGTCCACATTTTAAGGATGTTATCAGCTTTCTGTGGCCATTCAAGCTCAACAAGCCAGAAGGAGGTTTGCAGGGAAAGAAAAAGCTATATAAGGACGGGGGTGATGCTGGGAATCGTGAAGATCACATCAATGAATTCATCAATAAGATGAACTAA 741 0.417 MADEEPKPLKYVPEIVLKKRKSNEDWAIKRREQLEQRKQKSKQNRTLIFKRAEQYIKEHRSKELDLIQMKQRKKLRRSLNINPESKLLFIIRISGTNDMHPKTRKILHLLRLRRILSGVFVKANEGIMDMLRRVEPYVTYGYPNLKSVRELVYKQGYGTIDKQRVPLTDNNIIEQALGKYGIICIEDIVHEIATAGPHFKDVISFLWPFKLNKPEGGLQGKKKLYKDGGDAGNREDHINEFINKMN* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl09g01283 246 ProSitePatterns Ribosomal protein L30 signature. 106 138 IPR018038 -
Eupl09g01283 246 Pfam Ribosomal protein L30p/L7e 88 138 IPR016082 -
Eupl09g01283 246 PANTHER 60S RIBOSOMAL PROTEIN L7 9 246 IPR039699 -
Eupl09g01283 246 SUPERFAMILY Ribosomal protein L30p/L7e 87 246 IPR036919 -
Eupl09g01283 246 FunFam 60S ribosomal protein L7 87 191 - -
Eupl09g01283 246 NCBIfam 60S ribosomal protein uL30 13 246 IPR005998 GO:0000463|GO:0003735|GO:0022625
Eupl09g01283 246 CDD Ribosomal_L7_archeal_euk 87 246 IPR035808 -
Eupl09g01283 246 Pfam Ribosomal L30 N-terminal domain 12 79 IPR012988 -
Eupl09g01283 246 Gene3D - 87 190 IPR036919 -
Eupl09g01283 246 Gene3D - 191 246 IPR036919 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl09g01283 Eupl-Chr9 25548427 25554986 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl09g01283 1 246 Cytoplasmic Ribosomal Protein Gene Family AT3G13580 56.911 3.27e-105 303
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl09g01283 K02937 - msin:131216961 384.415