Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl09g01203 ATGAATTCGTTCTCCGTTACACGGAAGAAAACCCCTTTTCAGAAACATAGAGAGGAAGAAGAAGCGAAGAAAAAGAGAGCAGAGGATGAAACTGCTCGGTTGTATGCGGAATTCGTAGAGTCGTTTCAAGGTGATAATGCACCGGGGTCGAAGACTTTTGTTAGAGGAGGAACCATCAATCCCAATGACAAGCTGAAGACCGATTCTGAAGGTGGAAATTCCAAAGATGGGGTGTCTGTTCCAAAGAAGGGAAGTAGGTATGTTCCATCTTTCATACCACCTCCTTTGGCAACCAAAGGAAAAGAGCCTGAGAAGAAGAAAATGCAGAAGGAGGAGGAGAAGCCAAAGGAGAAGGAAAAAGGAAAGTCACGGAATATAGATCATTTTATGGAGGAACTGAAGCTTGAGCAAGAGTTGAGGGAGAGGCGCAATCAAGAGCGTGATGGGCGCTATATTGAAAATTCTGCTCCACTTAGCCGATTTGATGAGCTGCCTGATGATTTTGATCCAAGTGGCAAGATTCCTGGATCATTTGATGATGGGGACCCGCAAACTACGAACCTATATGTTGGGAATCTCTCGCCACAGGTGGATGAGAATTTTCTTTTAAGGACTTTTGGAAGATTTGGCCCTATTGCTAGTGTGAAGATAATGTGGCCTCGGACAGAAGAGGAACGGAGGCGGCAAAGAAATTGTGGCTTTGTGGCTTTCATGAATAGAGCAGATGGACAGGCTGCAAAGGATGAAATGCAAGGGGTTGTTGTTTATGAATATGAGTTGAAGATAGGATGGGGCAAGTCTGTCTCTCTTCCAGCGCAAGCGCTACCTGCTCCCCCACCCGGACAAATGGCCATCAGGAGTAAGGAGGGTGGCACTGTGATCTTGTCTGGTCCTGATGGTCCATCAGTAACTTCTGTGACGAATCAGAGCTCTGAGCTGGTTCTTACTCCAAATGTTCCTGATATAATGGTTGTTCCACCTGAGGATGATCACCTCAGCCATGTAATTGATACGATGGCTCTGTATGTTCTTGATGGAGGATGTGCTTTTGAACAAGCTATAATGGAGAGAGGTCGTGGAAATCCACTATTTAATTTCTTGTTCGAGCTTGGGTCGAAGGAGCATACTTACTATGTGTGGAGGCTGTACTCTTTTGCTCAGGGTGATACTCTTCAGAGGTGGCGAACTGAGCCTTTCATCATGATAACTGGGAGTGGGAGATGGATACCACCCCCTCTGCCACAAATCAAGAGTCCTGAGCATGAGAAGGAGTCTGGTACCACGTTCGCAGCGGGAAGAAGCAGGCGTGTAGAATTGGAACAGACGTTGACAGATCCACAGAGAGATGAGTTTGAGGATATGCTGCGTGCTTTGACATTGGAGAGGAACCAGATAAAAGAAGCCATGGGCTTTGCTTTAGATAATGCTGATGCCGCTGGGGAGATAGTTGAGGTTCTTAGTGAATCTTTGACACTCAAAGAAACCCCCATACCAACGAAAGTTGCAAGGCTCATGCTCGTCTCTGATATCCTTCATAATAGTAGTGCTCCTGTAAAGAATGCCTCTGCATACCGTACAAAATTTGAAGCGGCTTTACCTGACATAATGGAGAGCTTCAACGACTTGTACCGCAGTATCACAGGGAGGATCACTGCTGAGGCCCTCAAGGAACGAGTTATGAAGGTTCTCCAAGTATGGGCAGATTGGTTTCTCTTTTCAGATGCATATGTGAATGGACTGCGTGCTACTTTTCTTCGATCTGGGAACTCCGGCGTGCTCCCTTTTCATTCTATCTGTGGGGATGCGCCGCAAATTGAAAACAAGACCAGCTCCGAAGATTTGGCTGAAGGAGGTAAGCTCAACCAAGATGCTGCACTGGCAATGGGGAAGGGAGCAGCTATGAAGGAGTTGTCAAATCTTCCCCTGACTGAGCTGGAAAGACGTTGCAGACATAATGGGTTGTCGCTTGTTGGTGGTAGGGAAATGATGGTTGCAAGGTTGCTTAGTCTGGAAGAGGCTGAACGACAGAGGAGTTATGACCGAGATGATGTTATGAGATCTGGACAGAGCCATTCAAATTCAGTTAGATATTCAAAGGATGATAACAGCTGGAATGCGAATAATGGTGGTCGTAGAGAGACCGACCTTGGTATGGAACCAGTGGGGTCCTCAGGATGGAATCATTACGGGGAGGATGCGATGCGATCGCAAGGCAAAGGTTCTTCTGCACCTTTGGCCCCAACTCTTCCCATTCCACATCCTGAACTAAGAGCCTTTACAAAGAAAGGAAAATCTGATCCTGTTTTGCCCGATTCTAAATGGGCTCGAGAGGATGATGGCAGTGATGAAGAAGATAAGAGGAGTACTCGGGGTCTGGGGTTAAGCTATTCATCTTCTGGAAGTGAAAATGCTGATGATGGTCCCAGTAAGGCTGATGATTTTGAGGTTGCAACTGATGCAAGCATTTCGTCACACCCCGACAGTGTCTTGAATGAAGAACAGAGACAAAAGTTAAGGCGTCTAGAGGTTGCTTTGATGGAATATCGTGAGTCTCTTGAAGAACGAGGAATCAGAAGTTCGGAGGAAATTGAGAGGAAAGTGGCAATCCACCGGAGACGACTACAATCTGAATTTGGATTATCAGATTCTAATGAAGATGTTTCGGCTAACAAGAGGTCATCTTTGGAGAAGAATGAGAGACGAGACGATTCCCGTGATTCTTCGAGGAAACGACTTCGGAGTCAGAGCCGAAGCCGGAGCCCACAACGCAAGTTATTAACCAGAGACAGGGAAAGGGAAAATGATATGGACAGGGATCGTGAGAGACACCGTGATAGAGATAGAGCTCATGAGCCAGAGAGCGAAAGGGTAAGAGAGCGTGAGAAGAGTGGAAGCAGAGAGAGGGACGATCATGGTAGGGATAAAGGCAAAGAGAGGGACAAGGACAGGAGGAGAAAGGGGAAATGA 2967 0.4668 MNSFSVTRKKTPFQKHREEEEAKKKRAEDETARLYAEFVESFQGDNAPGSKTFVRGGTINPNDKLKTDSEGGNSKDGVSVPKKGSRYVPSFIPPPLATKGKEPEKKKMQKEEEKPKEKEKGKSRNIDHFMEELKLEQELRERRNQERDGRYIENSAPLSRFDELPDDFDPSGKIPGSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSVSLPAQALPAPPPGQMAIRSKEGGTVILSGPDGPSVTSVTNQSSELVLTPNVPDIMVVPPEDDHLSHVIDTMALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPPPLPQIKSPEHEKESGTTFAAGRSRRVELEQTLTDPQRDEFEDMLRALTLERNQIKEAMGFALDNADAAGEIVEVLSESLTLKETPIPTKVARLMLVSDILHNSSAPVKNASAYRTKFEAALPDIMESFNDLYRSITGRITAEALKERVMKVLQVWADWFLFSDAYVNGLRATFLRSGNSGVLPFHSICGDAPQIENKTSSEDLAEGGKLNQDAALAMGKGAAMKELSNLPLTELERRCRHNGLSLVGGREMMVARLLSLEEAERQRSYDRDDVMRSGQSHSNSVRYSKDDNSWNANNGGRRETDLGMEPVGSSGWNHYGEDAMRSQGKGSSAPLAPTLPIPHPELRAFTKKGKSDPVLPDSKWAREDDGSDEEDKRSTRGLGLSYSSSGSENADDGPSKADDFEVATDASISSHPDSVLNEEQRQKLRRLEVALMEYRESLEERGIRSSEEIERKVAIHRRRLQSEFGLSDSNEDVSANKRSSLEKNERRDDSRDSSRKRLRSQSRSRSPQRKLLTRDRERENDMDRDRERHRDRDRAHEPESERVREREKSGSRERDDHGRDKGKERDKDRRRKGK* 989
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl09g01203 988 SUPERFAMILY ENTH/VHS domain 446 585 IPR008942 -
Eupl09g01203 988 SMART cwf21_2 830 879 IPR013170 -
Eupl09g01203 988 MobiDBLite consensus disorder prediction 872 988 - -
Eupl09g01203 988 Pfam cwf21 domain 831 877 IPR013170 -
Eupl09g01203 988 MobiDBLite consensus disorder prediction 675 835 - -
Eupl09g01203 988 SMART rrm1_1 187 263 IPR000504 GO:0003723
Eupl09g01203 988 SUPERFAMILY Surp module (SWAP domain) 311 390 IPR035967 GO:0003723|GO:0006396
Eupl09g01203 988 Gene3D Surp module 321 390 IPR035967 GO:0003723|GO:0006396
Eupl09g01203 988 MobiDBLite consensus disorder prediction 922 981 - -
Eupl09g01203 988 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 188 260 IPR000504 GO:0003723
Eupl09g01203 988 MobiDBLite consensus disorder prediction 11 35 - -
Eupl09g01203 988 Gene3D - 830 881 - -
Eupl09g01203 988 ProSiteProfiles SURP motif repeat profile. 335 378 IPR000061 GO:0003723|GO:0006396
Eupl09g01203 988 MobiDBLite consensus disorder prediction 757 790 - -
Eupl09g01203 988 ProSiteProfiles SAP motif profile. 637 671 IPR003034 -
Eupl09g01203 988 MobiDBLite consensus disorder prediction 688 710 - -
Eupl09g01203 988 CDD RRM_SR140 185 268 IPR035009 -
Eupl09g01203 988 SMART 558neu5 450 585 IPR006569 -
Eupl09g01203 988 MobiDBLite consensus disorder prediction 791 805 - -
Eupl09g01203 988 Pfam Surp module 334 385 IPR000061 GO:0003723|GO:0006396
Eupl09g01203 988 MobiDBLite consensus disorder prediction 889 913 - -
Eupl09g01203 988 Coils Coil 448 468 - -
Eupl09g01203 988 PANTHER RNA PROCESSING PROTEIN LD23810P 1 919 - -
Eupl09g01203 988 Coils Coil 17 37 - -
Eupl09g01203 988 MobiDBLite consensus disorder prediction 141 164 - -
Eupl09g01203 988 Gene3D - 97 269 IPR012677 -
Eupl09g01203 988 SMART surpneu2 333 387 IPR000061 GO:0003723|GO:0006396
Eupl09g01203 988 SUPERFAMILY RNA-binding domain, RBD 179 280 IPR035979 GO:0003676
Eupl09g01203 988 MobiDBLite consensus disorder prediction 1 125 - -
Eupl09g01203 988 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 186 267 IPR000504 GO:0003723
Eupl09g01203 988 Coils Coil 831 851 - -
Eupl09g01203 988 MobiDBLite consensus disorder prediction 99 125 - -
Eupl09g01203 988 ProSiteProfiles CID domain profile. 443 588 IPR006569 -
Eupl09g01203 988 Pfam CID domain 450 578 IPR006569 -
Eupl09g01203 988 MobiDBLite consensus disorder prediction 45 67 - -
Eupl09g01203 988 Gene3D - 444 590 IPR008942 -
Eupl09g01203 988 CDD cwf21_RRC1-like 830 879 IPR047491 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl09g01203 Eupl-Chr9 23781208 23806359 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl09g01203 183 263 Eukaryotic Initiation Factors Gene Family AT1G71770 32.099 2.92e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl09g01203 K12842 - nnu:104612479 1527.69