Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl09g01174 ATGATCCTCGATTCAAATGACACAAATCTCGAGTACAATTCCACGGTTTTGACATTAGGAGAACATCCTCCTGAGGTTGTCACCAGCATTTCAATTTATATATACCCTACGTATTTCTGCCTAACACTCTTCTTCCAAGTTATTCTCTCTGAGTTTCGATCTGTGAAACGCCTGCCATCGCTAGGGTTTCTTTATCGATCGCATTTCTTCTGCAAATCGGTCGAGATGAAGCTGACGGTTAAGACATTGAAAGGCAGTCATTTTGAAATCCGAGTTCAGCCCGGCGACACGATTATGGCTGTAAAGAAGAATATTGAAGATGTGCAAGGAAAAGACAACTATCCATGTGGACAACAGTTACTGATTCATAATGGAAAGGTCTTGAAGGATGAAAGTACATTGGCAGAGAACAAAGTTAGTGAAGATGGTTTTCTTGTTGTAATGCTTAGCAAGAGCAAAACCTTAGGTTCAGCTGGGGCCTCATCTGCTCAGCCTGCGGCAAATGCACCAACTGCAGTGACATCTACTCCCACCCCTGCATCTATAGCTCCTCCACAAGCACCGGCCTCAATGAGTACTGCATCTGCTTCTGACATAGCAATAACTGAGGTGCCTGCTGAGGCCTATGGGCAAGCTGCATCCAATTTGGTTGCTGGTAATAGTCTTGAGCAGACTATTCAACAAATAATGGATATGGGTGGTGGTAACTGGGACAAGGAGACTGTTACTCGTGCACTTCGTGCAGCTTACAACAATCCAGAGCGAGCTGTGGAGTATTTATATTCTGGTATTCCAGCAGCAACGGAAGTTGCTGTTCCAGCGGCTCATTTCCCTTCAAATCAGGCATCGGTTGGGGTTAATTCCACAACTGAAACAGGTGTAGCAGGGGCTGCACCGCTCTCTGGAGTACCTAATTCTTCTCCTCTGAATATGTTTCCGCAGGAGACACTCAATTCTGATGCAAGTGGTGGAGGTGGATCCCTTGATTTCCTCAGAGACAACCAACAGTTCCAAGCATTGCGTTCGATGGTGCAAGCAAATCCACAGATTCTACAGGTTTTTATTTTGTTTTCTTGGAGAACTTTAAATCGCTTTTTCACATTTCAGAGTTTGAAACTGCCTGTTCTGTTACAGCCAATGCTTCAGGAACTAAGCAAGCAAAATCCCCAACTTCTGAGATTAATTCAGGAGCACCATGCGGAGTTTCTTCAGTTAATAAATGAACCTCTTGAAGGTGCTGAAGGTGATCTGTTTGAGCAGCCTGAGCAAGACATGCCCCATGCTGTCAATGTGACACCGGCAGAGCAGGAGGCCATTGAACGGCTTGAAGCAATGGGATTTGAAAGAGCCCTTGTTATTGAGGCATTTTTAGCCTGTGATCGAAATGAGGAATTGGCAGTGAACTACTTATTGGAGAATGCTGGTGATTATGAGGATTGA 1440 0.4472 MILDSNDTNLEYNSTVLTLGEHPPEVVTSISIYIYPTYFCLTLFFQVILSEFRSVKRLPSLGFLYRSHFFCKSVEMKLTVKTLKGSHFEIRVQPGDTIMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDESTLAENKVSEDGFLVVMLSKSKTLGSAGASSAQPAANAPTAVTSTPTPASIAPPQAPASMSTASASDIAITEVPAEAYGQAASNLVAGNSLEQTIQQIMDMGGGNWDKETVTRALRAAYNNPERAVEYLYSGIPAATEVAVPAAHFPSNQASVGVNSTTETGVAGAAPLSGVPNSSPLNMFPQETLNSDASGGGGSLDFLRDNQQFQALRSMVQANPQILQVFILFSWRTLNRFFTFQSLKLPVLLQPMLQELSKQNPQLLRLIQEHHAEFLQLINEPLEGAEGDLFEQPEQDMPHAVNVTPAEQEAIERLEAMGFERALVIEAFLACDRNEELAVNYLLENAGDYED* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl09g01174 479 CDD UBA1_Rad23_plant 216 265 - -
Eupl09g01174 479 SMART ubq_7 76 150 IPR000626 GO:0005515
Eupl09g01174 479 FunFam UV excision repair protein RAD23 76 155 - -
Eupl09g01174 479 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 433 473 IPR015940 -
Eupl09g01174 479 ProSiteProfiles Ubiquitin domain profile. 76 154 IPR000626 GO:0005515
Eupl09g01174 479 NCBIfam UV excision repair protein Rad23 76 354 IPR004806 GO:0006289
Eupl09g01174 479 Gene3D - 215 266 - -
Eupl09g01174 479 Coils Coil 381 401 - -
Eupl09g01174 479 FunFam UV excision repair protein RAD23 homolog 215 265 - -
Eupl09g01174 479 CDD Ubl_Rad23 76 149 - -
Eupl09g01174 479 Pfam UBA/TS-N domain 222 260 IPR015940 -
Eupl09g01174 479 Pfam UBA/TS-N domain 435 470 IPR015940 -
Eupl09g01174 479 SUPERFAMILY XPC-binding domain 324 353 IPR036353 GO:0003684|GO:0006289|GO:0043161
Eupl09g01174 479 Gene3D - 318 356 IPR036353 GO:0003684|GO:0006289|GO:0043161
Eupl09g01174 479 SUPERFAMILY UBA-like 219 270 IPR009060 GO:0005515
Eupl09g01174 479 Gene3D - 370 410 IPR036353 GO:0003684|GO:0006289|GO:0043161
Eupl09g01174 479 PANTHER UV EXCISION REPAIR PROTEIN RAD23 76 468 - -
Eupl09g01174 479 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 220 263 IPR015940 -
Eupl09g01174 479 MobiDBLite consensus disorder prediction 158 189 - -
Eupl09g01174 479 SUPERFAMILY Ubiquitin-like 76 161 IPR029071 -
Eupl09g01174 479 Gene3D - 426 474 - -
Eupl09g01174 479 SUPERFAMILY UBA-like 416 476 IPR009060 GO:0005515
Eupl09g01174 479 FunFam UV excision repair protein RAD23 homolog 426 474 - -
Eupl09g01174 479 Pfam XPC-binding domain 374 409 IPR015360 GO:0003684|GO:0006289|GO:0043161
Eupl09g01174 479 Pfam XPC-binding domain 328 354 IPR015360 GO:0003684|GO:0006289|GO:0043161
Eupl09g01174 479 PRINTS DNA repair protein Rad23 signature 429 445 IPR004806 GO:0006289
Eupl09g01174 479 PRINTS DNA repair protein Rad23 signature 461 476 IPR004806 GO:0006289
Eupl09g01174 479 PRINTS DNA repair protein Rad23 signature 380 402 IPR004806 GO:0006289
Eupl09g01174 479 PRINTS DNA repair protein Rad23 signature 446 460 IPR004806 GO:0006289
Eupl09g01174 479 SMART uba_6 435 472 IPR015940 -
Eupl09g01174 479 SMART uba_6 222 262 IPR015940 -
Eupl09g01174 479 SUPERFAMILY XPC-binding domain 373 416 IPR036353 GO:0003684|GO:0006289|GO:0043161
Eupl09g01174 479 Gene3D - 71 152 - -
Eupl09g01174 479 Pfam Ubiquitin family 78 151 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl09g01174 Eupl-Chr9 23303890 23324524 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl09g01174 76 149 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 39.189 2.69e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl09g01174 K10839 - nnu:104589833 578.941