Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl09g01137 ATGGACTTGGTTTTCTTTCAAACAAAGGAAAAAGCCTACCTTTCTCCATCTCAACAACCATTTTTTTTTCCTGTGCAACTCTCGCCTCCTCCTCCTTTTCAATCTGGTAGTAGCTTTAATGTTGAAAACAAGATTAGCCCAAGTATCTTGCTCATCATAATAATTCTTGCTATTATCTTCTTCATTTCTGGTTTGCTTCACCTCCTTGTTAGATTCCTCTTGAGACCCACGAACAGAGACCCAGAAGATTTGGACAGTGTGACTGCCTTACAAGGTCAGCTGCAGCAACTCTTCCATCTCCATGATGCTGGGGTTGATCAGTCTTACATAGACACCCTTCCTGTCTTCCTTTATAATGCCATTATTGGATTGAAGAACCCCTTTGATTGTGCTGTCTGTCTCTGTGAATTTGAAGCTGAAGATAAGCTTAGATTGCTCCCTAAATGCAGCCATGCTTTCCATCTTGAGTGCATAGACACATGGCTCTTGTCTCACTCCACTTGCCCTCTTTGTAGAGGCAGCTTGCTTCCTGATTTCTCTCCAAACAATAGCCGCTCTCCTGTTGTTCTTGTTCTTGAATCTGGGAGTGAAAGCTCTAGAGAAATTGTTTCAGACAGAGATGCTGCTATCTCTGTTCTTAGCACTAATGCAGTTGCCGGACCAGGTACTCACATGGGTTTTCATGGAGAAGATGAATTGGGTCCATCTTGTAATGATGTTTCTCAGAAATTTAGTGAAATTCCCATTAAAGATGATGCCGTTCCGGTCGTGGTTTCGACTGTTTTGGAGGAGAAAGTTGTTCCTGTTAAACTTGGGAAGTTCAGGAATGTCGATATTGTCACTGAAGGAGGATTGGAAGGTAGTAGCAGTAACAGTAATGTTGATGCTAGGAGGTGCTTCTCTATGGGTTCCTTTGAATATGTTATGGATGAGAGTTCATCATTGCAGGTAACCATAAGACCCCCTATACGAAAACAGACAAGTAAGAAGCCTTCGCTGCCGCTAACTCCTGGTCACCGGCCTGCAATGTCCGAATGCGACTGCCATTCCAGTAGAGAAGGATTTAAGGGATTTGATAGTATGAGAAGTATTGAGATTCACAGCGGTGACAATGGCAGTATTAGTACTGGAAATTCTGTTGGAAAGAGCAAAAGAGAGAGCTTCTCTGTTTCAAAGATCTGGCTTCGATCGAAGAAGGAAAAGCCATCGTCGACAGTAGATTCTTCGAGGCGGGCCTTCTCCTTCCGATTCCCATTGAATCAGACGGTTGCTGCTGCCGATGATTTAAAGCTGAAGCATAACAACAACAGCAGCAGTAGAAGGACTATTTCGGATATCGATGTTTCGAGGTGGGAGAGTTGTGTGAGTGAATTGGGTATTGATGAGGAAGTTGGAAGCTGTAATAGTCTGGATTCTCAATCAAATATGCCATCCTTTGCAAGGAGGACACTACTTTGGCTTGTTGGAAAGCAGAACAAGGTTGTTCACTCATCCTCCTCTACCAATGTTTGA 1512 0.4332 MDLVFFQTKEKAYLSPSQQPFFFPVQLSPPPPFQSGSSFNVENKISPSILLIIIILAIIFFISGLLHLLVRFLLRPTNRDPEDLDSVTALQGQLQQLFHLHDAGVDQSYIDTLPVFLYNAIIGLKNPFDCAVCLCEFEAEDKLRLLPKCSHAFHLECIDTWLLSHSTCPLCRGSLLPDFSPNNSRSPVVLVLESGSESSREIVSDRDAAISVLSTNAVAGPGTHMGFHGEDELGPSCNDVSQKFSEIPIKDDAVPVVVSTVLEEKVVPVKLGKFRNVDIVTEGGLEGSSSNSNVDARRCFSMGSFEYVMDESSSLQVTIRPPIRKQTSKKPSLPLTPGHRPAMSECDCHSSREGFKGFDSMRSIEIHSGDNGSISTGNSVGKSKRESFSVSKIWLRSKKEKPSSTVDSSRRAFSFRFPLNQTVAAADDLKLKHNNNSSSRRTISDIDVSRWESCVSELGIDEEVGSCNSLDSQSNMPSFARRTLLWLVGKQNKVVHSSSSTNV* 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl09g01137 503 SUPERFAMILY RING/U-box 109 183 - -
Eupl09g01137 503 MobiDBLite consensus disorder prediction 319 333 - -
Eupl09g01137 503 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 42 394 - -
Eupl09g01137 503 ProSiteProfiles Zinc finger RING-type profile. 130 172 IPR001841 -
Eupl09g01137 503 CDD RING-H2_EL5-like 129 172 - -
Eupl09g01137 503 Pfam Ring finger domain 129 172 IPR001841 -
Eupl09g01137 503 FunFam RING-H2 finger protein ATL46 92 177 - -
Eupl09g01137 503 SMART ring_2 130 171 IPR001841 -
Eupl09g01137 503 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 104 177 IPR013083 -
Eupl09g01137 503 MobiDBLite consensus disorder prediction 319 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl09g01137 Eupl-Chr9 22697939 22700050 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl09g01137 40 500 C3H Transcription Factor Family AT2G18650 47.059 8.04e-101 308
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl09g01137 - - nnu:104605351 679.478