Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl09g01134 ATGCCCCTCAATCGTGACCGCCCAAACGGCGAACAATATACAGTTTGTACACCATCACCTTCTCCAAGCCACGTTTGTACGATCTTGATCACATCGTCTTCTGTCCCTCCCATTTCGATAGGGCCGCGACGCACGTCAACACAACCCAACCCCAGATTTCTCTTCTTCTTCCTCCAAGCCGTCATCATGGCCGTCGGGGTTTCTCTCTTCTTTTTATTTGTCGGCATCGCCACCATCGTCCTCTTACTAATCTGCATTGCCCGCCGGGTCCTCCAACACCGAACCACAACACACTTCTCCAATTGGATCGAAGACGATGTTGAATTCGGTGTCGGGTTGTCACCGATGGACCTGAAGAAGCTCCACTGTTTCAGTTATGGAGCGGGCGTTGAACCGGCATCAACCAGAGACTGCGCCGTCTGCTTGGAGGGTTTTCGGGGAGGTGATCGATGCCGGGTTCTTCCGGGGTGTAAGCATGTTTTTCATGCAAATTGCGTTGATGCGTGGTTGATTATAGCTTCTACGTGTCCGATTTGCCGTGGGAGCGTTGAATTGAAGGCAGAGGTTGGTGTCTGGTCTGGATTTGAAGCGGGTTGGTTCGCCCGGACCCGATCAATGGATGTAAAGAGAGGTGGGGAAGTCCAAAACTCTTAA 654 0.5199 MPLNRDRPNGEQYTVCTPSPSPSHVCTILITSSSVPPISIGPRRTSTQPNPRFLFFFLQAVIMAVGVSLFFLFVGIATIVLLLICIARRVLQHRTTTHFSNWIEDDVEFGVGLSPMDLKKLHCFSYGAGVEPASTRDCAVCLEGFRGGDRCRVLPGCKHVFHANCVDAWLIIASTCPICRGSVELKAEVGVWSGFEAGWFARTRSMDVKRGGEVQNS* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl09g01134 217 ProSiteProfiles Zinc finger RING-type profile. 138 180 IPR001841 -
Eupl09g01134 217 SMART ring_2 138 179 IPR001841 -
Eupl09g01134 217 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 44 188 - -
Eupl09g01134 217 Pfam Ring finger domain 137 180 IPR001841 -
Eupl09g01134 217 SUPERFAMILY RING/U-box 137 186 - -
Eupl09g01134 217 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 188 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl09g01134 Eupl-Chr9 22666715 22667563 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl09g01134 48 188 C3H Transcription Factor Family AT2G18670 42.759 1.29e-22 89.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl09g01134 - - nnu:104605349 184.496