Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl09g01114 ATGTCTCGCGTATACGTTGGGAATTTGGATCCACGAGTAACTGAGCGAGAACTTGAAGATGAATTTCGTACGTTCGGAGTCTTGCGAAGTGTATGGGTTGCAAGAAGACCACCAGGATATGCATTTATTGATTTTGATGATCGTAGGGATGCACTAGATGCAATTCGTGAATTGGATGGTAAAAATGGATGGAGAGTTGAGCTCTCACACAACTCTAGAGGTGGAGGTGGAGGTGGAGGTGGAGGTGGTGGAGGCCGTGGTGGAGGCCGTGGCCGTTCTGGAGGTTCTGATCTGAAGTGCTATGAGTGTGGTGAGTCTGGTCATTTTGCTCGAGAATGCCGCACGCGTGTTGGTTCTGGAAGACGTCGTAGCCGCAGCCCTAGAAATCGTAGAAGTCCAAGCTATGGTCGAAGGAGCAACAGTCCTCGCAGGCATTCTCCGAGGCGCCACAGTCCCTCACCTCCTCGTGGACGTAGCCTTAGCAGGTCACCGCAATATCACCGTGGACACAAGGAATCACCATATGCTAACGGAAATGTTGCCAGAGATCGACGCCGGAGCAGGAGCTGA 570 0.5193 MSRVYVGNLDPRVTERELEDEFRTFGVLRSVWVARRPPGYAFIDFDDRRDALDAIRELDGKNGWRVELSHNSRGGGGGGGGGGGGRGGGRGRSGGSDLKCYECGESGHFARECRTRVGSGRRRSRSPRNRRSPSYGRRSNSPRRHSPRRHSPSPPRGRSLSRSPQYHRGHKESPYANGNVARDRRRSRS* 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl09g01114 189 CDD RRM_SRSF3_like 3 71 - -
Eupl09g01114 189 MobiDBLite consensus disorder prediction 120 152 - -
Eupl09g01114 189 SUPERFAMILY RNA-binding domain, RBD 3 94 IPR035979 GO:0003676
Eupl09g01114 189 ProSiteProfiles Zinc finger CCHC-type profile. 99 114 IPR001878 GO:0003676|GO:0008270
Eupl09g01114 189 Gene3D - 98 155 - -
Eupl09g01114 189 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 73 IPR000504 GO:0003723
Eupl09g01114 189 Pfam Zinc knuckle 99 114 IPR001878 GO:0003676|GO:0008270
Eupl09g01114 189 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 174 - -
Eupl09g01114 189 SMART rrm1_1 3 69 IPR000504 GO:0003723
Eupl09g01114 189 FunFam Serine/arginine-rich splicing factor RSZ22A 96 156 - -
Eupl09g01114 189 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 61 IPR000504 GO:0003723
Eupl09g01114 189 Gene3D - 1 97 IPR012677 -
Eupl09g01114 189 FunFam serine/arginine-rich splicing factor RSZ22-like 1 98 - -
Eupl09g01114 189 SMART c2hcfinal6 99 115 IPR001878 GO:0003676|GO:0008270
Eupl09g01114 189 MobiDBLite consensus disorder prediction 114 189 - -
Eupl09g01114 189 SUPERFAMILY Retrovirus zinc finger-like domains 92 117 IPR036875 GO:0003676|GO:0008270
Eupl09g01114 189 MobiDBLite consensus disorder prediction 66 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl09g01114 Eupl-Chr9 22299653 22312321 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl09g01114 2 59 Eukaryotic Initiation Factors Gene Family AT1G22760 41.935 1.08e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl09g01114 K12896 - nnu:104612357 229.95