Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Eupl09g01114 | ATGTCTCGCGTATACGTTGGGAATTTGGATCCACGAGTAACTGAGCGAGAACTTGAAGATGAATTTCGTACGTTCGGAGTCTTGCGAAGTGTATGGGTTGCAAGAAGACCACCAGGATATGCATTTATTGATTTTGATGATCGTAGGGATGCACTAGATGCAATTCGTGAATTGGATGGTAAAAATGGATGGAGAGTTGAGCTCTCACACAACTCTAGAGGTGGAGGTGGAGGTGGAGGTGGAGGTGGTGGAGGCCGTGGTGGAGGCCGTGGCCGTTCTGGAGGTTCTGATCTGAAGTGCTATGAGTGTGGTGAGTCTGGTCATTTTGCTCGAGAATGCCGCACGCGTGTTGGTTCTGGAAGACGTCGTAGCCGCAGCCCTAGAAATCGTAGAAGTCCAAGCTATGGTCGAAGGAGCAACAGTCCTCGCAGGCATTCTCCGAGGCGCCACAGTCCCTCACCTCCTCGTGGACGTAGCCTTAGCAGGTCACCGCAATATCACCGTGGACACAAGGAATCACCATATGCTAACGGAAATGTTGCCAGAGATCGACGCCGGAGCAGGAGCTGA | 570 | 0.5193 | MSRVYVGNLDPRVTERELEDEFRTFGVLRSVWVARRPPGYAFIDFDDRRDALDAIRELDGKNGWRVELSHNSRGGGGGGGGGGGGRGGGRGRSGGSDLKCYECGESGHFARECRTRVGSGRRRSRSPRNRRSPSYGRRSNSPRRHSPRRHSPSPPRGRSLSRSPQYHRGHKESPYANGNVARDRRRSRS* | 190 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Eupl09g01114 | 189 | CDD | RRM_SRSF3_like | 3 | 71 | - | - | |
Eupl09g01114 | 189 | MobiDBLite | consensus disorder prediction | 120 | 152 | - | - | |
Eupl09g01114 | 189 | SUPERFAMILY | RNA-binding domain, RBD | 3 | 94 | IPR035979 | GO:0003676 | |
Eupl09g01114 | 189 | ProSiteProfiles | Zinc finger CCHC-type profile. | 99 | 114 | IPR001878 | GO:0003676|GO:0008270 | |
Eupl09g01114 | 189 | Gene3D | - | 98 | 155 | - | - | |
Eupl09g01114 | 189 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 2 | 73 | IPR000504 | GO:0003723 | |
Eupl09g01114 | 189 | Pfam | Zinc knuckle | 99 | 114 | IPR001878 | GO:0003676|GO:0008270 | |
Eupl09g01114 | 189 | PANTHER | SERINE/ARGININE RICH SPLICING FACTOR | 2 | 174 | - | - | |
Eupl09g01114 | 189 | SMART | rrm1_1 | 3 | 69 | IPR000504 | GO:0003723 | |
Eupl09g01114 | 189 | FunFam | Serine/arginine-rich splicing factor RSZ22A | 96 | 156 | - | - | |
Eupl09g01114 | 189 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 4 | 61 | IPR000504 | GO:0003723 | |
Eupl09g01114 | 189 | Gene3D | - | 1 | 97 | IPR012677 | - | |
Eupl09g01114 | 189 | FunFam | serine/arginine-rich splicing factor RSZ22-like | 1 | 98 | - | - | |
Eupl09g01114 | 189 | SMART | c2hcfinal6 | 99 | 115 | IPR001878 | GO:0003676|GO:0008270 | |
Eupl09g01114 | 189 | MobiDBLite | consensus disorder prediction | 114 | 189 | - | - | |
Eupl09g01114 | 189 | SUPERFAMILY | Retrovirus zinc finger-like domains | 92 | 117 | IPR036875 | GO:0003676|GO:0008270 | |
Eupl09g01114 | 189 | MobiDBLite | consensus disorder prediction | 66 | 101 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Eupl09g01114 | Eupl-Chr9 | 22299653 | 22312321 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Eupl09g01114 | 2 | 59 | Eukaryotic Initiation Factors Gene Family | AT1G22760 | 41.935 | 1.08e-06 | 46.2 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Eupl09g01114 | K12896 | - | nnu:104612357 | 229.95 |