Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl09g01082 ATGGCATGCGACGAAGAAAGACGGAAGGGTTTTGGTCCGAGTTGGAGCTTGTCGGCCAAACCCTGTGACTCGTGCAAATCGACGTCGGCTCTGCTGTTCTGCCGAGCTGACTCGGCCTTCCTCTGCATCGGCTGCGACGCCAAGGTCCACGGCGCAAACAAGCTTGCGTCTCGCCACGAAAGAGTCTGGATGTGTGAGGTCTGCGAACAAGCTCCGGCCAGCGTCACCTGCAAGGCCGACGCCGCTGCCCTCTGCGTCACTTGTGACCGAGACATCCACTCAGCAAATCCACTCGCTCGACGACACGAACGTATCCCAGTCGTTCCCTTCTACGAATCAGCCGCCTCCGCCATTAAATCTAACGCCGTCAACATCCTCGTTCCTGACGGCCTCCTCAAACCCTCTGACGACGATGACGACCGTAACGATGATCAAGATGAAGACGACGCTGACACCTGTCGTGAAGAGGCTGAAGCTGCTTCCTGGCTACTCCCAAATCCCAATCCTAAGCTCATGGAGGCTCCTGATCTCAAATCCGGAGATTATTTCTTCTCAGAGGTTGATCCCTATCTTGATCTCGACTACGCATCGTCGATGGATGCCAGGTTTCAGCACCATCACGGTGCGGGTACTGACAGTGTAGTTCCAGTGCAGACCGAACCCCCACCGCCTACTCTCATCAATCCTTCCTCTATCGACATGGATTTTGGCCGATCCAAGCCTTCTTACAGCTACACAACTCCATCTCTTAGCCAGAGCGTATCTTCGTCGTCTCTGGATGTAGGAGTTGTGCCGGATGGTAACGGTAACGCCATGGCTGATATATCGAATCCATTTGGGAGGAACATGAAGAGTGGGATGGATTTTACAGGTTCTGCTACTGCTACAGCGAATCAGCAAGCTTCTCAGTTGTCTGGTATGGATCGAGAAGCTAGGGTTTTGAGATATAGAGAGAAGAGAAAGAACAGAAAGTTCGAGAAGACAATCCGGTACGCTTCGAGGAAAGCGTACGCTGAGACACGACCCAGGATTAAAGGTAGGTTCGCGAAACGAACGGAGATTGAAGCAGAAGTTGATCGAATCTACTCGTCTGCGGCCGTTTTGATGGCTGATACTGGATATGGTATCGTACCTTCATTTTGA 1143 0.5241 MACDEERRKGFGPSWSLSAKPCDSCKSTSALLFCRADSAFLCIGCDAKVHGANKLASRHERVWMCEVCEQAPASVTCKADAAALCVTCDRDIHSANPLARRHERIPVVPFYESAASAIKSNAVNILVPDGLLKPSDDDDDRNDDQDEDDADTCREEAEAASWLLPNPNPKLMEAPDLKSGDYFFSEVDPYLDLDYASSMDARFQHHHGAGTDSVVPVQTEPPPPTLINPSSIDMDFGRSKPSYSYTTPSLSQSVSSSSLDVGVVPDGNGNAMADISNPFGRNMKSGMDFTGSATATANQQASQLSGMDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTEIEAEVDRIYSSAAVLMADTGYGIVPSF* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl09g01082 380 CDD Bbox1_BBX-like 65 107 - -
Eupl09g01082 380 SMART bboxneu5 65 107 IPR000315 GO:0008270
Eupl09g01082 380 SMART bboxneu5 17 64 IPR000315 GO:0008270
Eupl09g01082 380 CDD Bbox1_BBX-like 21 64 - -
Eupl09g01082 380 Pfam CCT motif 309 351 IPR010402 GO:0005515
Eupl09g01082 380 ProSiteProfiles CCT domain profile. 309 351 IPR010402 GO:0005515
Eupl09g01082 380 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 21 368 IPR045281 GO:0009909
Eupl09g01082 380 MobiDBLite consensus disorder prediction 129 154 - -
Eupl09g01082 380 ProSiteProfiles Zinc finger B-box type profile. 17 64 IPR000315 GO:0008270
Eupl09g01082 380 ProSiteProfiles Zinc finger B-box type profile. 60 107 IPR000315 GO:0008270
Eupl09g01082 380 MobiDBLite consensus disorder prediction 139 154 - -
Eupl09g01082 380 Pfam B-box zinc finger 62 107 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl09g01082 Eupl-Chr9 21691279 21693414 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl09g01082 17 380 C2C2-CO-like Transcription Factor Family AT5G24930 51.414 3.90e-109 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Eupl09g01082 zf-B_box 8e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl09g01082 - - nnu:104599091 563.918