LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Eupl09g01075	ATGGGTTTTGCAACCACCATAGGGAAGTACCAGCTTGGTAGAACCATTGGAGAAGGAACCTTTGCAAAGGTTAAGCTGGCGAACGACACTGTTACTGGACAGAACTTCGCGATCAAGATCATCGATAAGCAGATGGTCATGGAAAACAAGCTCATGGATCAGGTAAAGAGAGAGATAAGTGCAATGAAGCTTCTGCATCACCCCAACATTGTTCGAATATACGAGGTTATTGCCACCAAGACCAAAATTTACATTGTAATGGAATACATTTCTTGTGGGCAGCTCTCGGACAAGTTGTCCTACCTCAAGAGGTTATGCGAAGGAGAAGCTAGGAAATATTTCCAGCAGTTGATCGATGCCGTGGACTATTGCCATGACAGAGGTGTTTATCACAGAGATTTGAAGCCGGAAAACCTGCTATTGGATGGCAAAGGAAATCTGAAGGTCTCTGACTTTGGACTCAGCGTCTTGCGGAAGCCTGGAGACTTACTATCAACAGCATGCGGCTCTCCAAGCTATGTAGCCCCTGAGGTGATTGCCAATAAGAACTACGATGGTGCCGCGGCAGATGTTTGGTCTTGTGGAGTTGTCCTTTACGAATTACTTGCTGGTTATCTGCCCTTTGATGATCGTAACCTGATGAACTTGTACAGGAAGATATCCAGAGCTGAATACACATGCCCCGAGTGGTTTACAGCAAGCTCAAGGAAACTAATTTTCAAGATACTTGATCCATTACCGATAAGGCGGATGACAGTAGCAGATATTCTTGAAGATGAGTGGTTTCAAACCAATTATGAGCCTTCTACAGGAATCCACTGTGATGGAAACGTCGACTTGGATGACATTAATGCTGCATTTGATGGTATCGCAGGAAATGCCACTGAAATAAAGAAATCCAAATCCCCAAGTTTCATCAACGCTTTCCAACTAATAGCAATGTCTAATGACCTTGATTTGTCACGCCTCTTTGAAGAACAGGACGACGACAAACAGATAACAAGGCTTGGTTCCAAGCATCCAATTAATGAGACAATAGAGAAAATCGAGGCTGCTGCAAAGGATGTAAGTCTCTCAGTTGAAAGGATGAACAATTCCAAGGTGAAACTCCATCAGAAAAATAAGTTGACCAGATGTAGTAGATCATATGTTAACTTATCAGCAGAGGTGATTGAGGTGACACCCACACACTGCGTGGTAGAAATATCAAAATCCGCAGGGGAGCTAAGACTGTACAAAGAGTTCTGCAAAAGTTTATCAAGTCTGCTTAAGGAGAAATCAGGTGTACCAGAATTGTACTTGCCCCCAGCAATCAGCGCCGACGGAAAAGACATCCAAGAAACTGGATGCTCCAAAGAGGAAGAGCACAACAGGGATAATAAACAACTCCATGGTGGCAATTCACACTCTCACCAGCTTTTTCAATTACACAGCTCCAAAGAGGAAGAGCGCAATACCGACAATAAACAACTCCATCGTGGCTATTCATCCTCTTGA	1497	0.4369	MGFATTIGKYQLGRTIGEGTFAKVKLANDTVTGQNFAIKIIDKQMVMENKLMDQVKREISAMKLLHHPNIVRIYEVIATKTKIYIVMEYISCGQLSDKLSYLKRLCEGEARKYFQQLIDAVDYCHDRGVYHRDLKPENLLLDGKGNLKVSDFGLSVLRKPGDLLSTACGSPSYVAPEVIANKNYDGAAADVWSCGVVLYELLAGYLPFDDRNLMNLYRKISRAEYTCPEWFTASSRKLIFKILDPLPIRRMTVADILEDEWFQTNYEPSTGIHCDGNVDLDDINAAFDGIAGNATEIKKSKSPSFINAFQLIAMSNDLDLSRLFEEQDDDKQITRLGSKHPINETIEKIEAAAKDVSLSVERMNNSKVKLHQKNKLTRCSRSYVNLSAEVIEVTPTHCVVEISKSAGELRLYKEFCKSLSSLLKEKSGVPELYLPPAISADGKDIQETGCSKEEEHNRDNKQLHGGNSHSHQLFQLHSSKEEERNTDNKQLHRGYSSS*	499

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Eupl09g01075	498	Gene3D	Transferase(Phosphotransferase) domain 1	3	300	-	-
	Eupl09g01075	498	CDD	CIPK_C	307	424	-	-
	Eupl09g01075	498	Gene3D	Kinase associated domain 1, KA1	301	426	-	-
	Eupl09g01075	498	Pfam	NAF domain	303	361	IPR004041	GO:0007165
	Eupl09g01075	498	SUPERFAMILY	Protein kinase-like (PK-like)	7	263	IPR011009	-
	Eupl09g01075	498	FunFam	Non-specific serine/threonine protein kinase	301	427	-	-
	Eupl09g01075	498	PANTHER	CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED	6	414	-	-
	Eupl09g01075	498	SMART	serkin_6	10	262	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Eupl09g01075	498	FunFam	Non-specific serine/threonine protein kinase	2	89	-	-
	Eupl09g01075	498	MobiDBLite	consensus disorder prediction	475	490	-	-
	Eupl09g01075	498	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	129	141	IPR008271	GO:0004672\|GO:0006468
	Eupl09g01075	498	ProSiteProfiles	NAF domain profile.	301	325	IPR018451	GO:0007165
	Eupl09g01075	498	MobiDBLite	consensus disorder prediction	449	498	-	-
	Eupl09g01075	498	MobiDBLite	consensus disorder prediction	449	465	-	-
	Eupl09g01075	498	ProSitePatterns	Protein kinases ATP-binding region signature.	16	39	IPR017441	GO:0005524
	Eupl09g01075	498	FunFam	Non-specific serine/threonine protein kinase	3	303	-	-
	Eupl09g01075	498	Pfam	Protein kinase domain	10	262	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Eupl09g01075	498	ProSiteProfiles	Protein kinase domain profile.	10	262	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Eupl09g01075	Eupl-Chr9	21571893	21575937	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Eupl09g01075	5	425	CBL-interacting serine-threonine protein kinases	AT1G01140	50.115	2.23e-148	430

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CAMKL-CHK1	Eupl09g01075		Pkinase	1.6e-70	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Eupl09g01075	-		-	ming:122081260	706.057