Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl09g01061 ATGAGATTGGAAAGAGATGATCATGCGGGGCAGATTCCGGCGCCGGAGGACGGCGAGAAAGACAAGTTTCCGGAAGGAATGCGAGTTTTGGCTGTCGACGACAATTCGGTTTGCCTGAGGGTGCTCGAGGCCTTTCTTCGACAGTGCCGCTACAGAGCTACGGTAACCACAGAATCTGTCACTGCTCTCAAGCTGTTGAGGGAGAATAAGAACCATTTCGATATCGTGATAACTGATGTTCACATGCTTGACATGGATGGTTTCAAGCTCTTGGAGATCATCGGTCTCGAAATGGACATACCTGTAATCATGATGTCTTCGAATGATGACCAAAGCACTGTGATGAAGGGTATAGAATATGGAGCTTGCGACTATTTATTGAAGCCCATTCGGTTGGAGGAGATAAAAAATATATGGCAGCATGTGATTAGGAAAACTAAATTTGATACCAGCGATTCGAATGTTGCAAAAGTAGCAGTGGATCGGATTTCGAATCCAAACAAAAGACAGAATAATCAATGTAGGGAGAAAGACGATGCCAATGTTCAATCTGATGGACACTCTTCAGCTCAGAAAAGACCGAGGGTTGCTTGGTCACGGGAGCTACATACAAAGTTTATCTCTGCCTTTGAGAAGTTAGGACCAGATAAGGCAGTACCGTCGAAGTTACTCGAACAGATGAATGTCCCAGGGCTTACTCGTGAAAAAATTGCTAGTCATCTCCAGAAGTATAGAAATGCTCTGAGAAAGAACAGAAGCCAACAAAGCAATATCATTGTTGCTTCTAATGGAATGGATGAACGTCAACCAAATACTACCATTTTATCTTTTGAAGAGCGTGTTCCTAATGGGGTAAATTGCTTGGATGATTTCACAGTCAATGATTATCGTAATTCTGGAATGATTCAGTTCGACCATCGCATTCAAAGTCCCAACATCTTAAGCGCGTCTCTTTTAAAGTCCAAGTCACTCTCACTCCCTCCGCATCAGCAGAACATTTTACCTCAGCAGTATCCACAGGCTTTCCATCAAAGTGTACAAGTTCGTGGGCATGGAAATGATCCCTCAAATCCAATGAGGATGGAAAATTTACATCACCAATCATATCTTAACAGGCTAAAATATCAATCTTTTTCTCCAAGAAACAAAATGTGCAAGGAATATCTGGATATTTCTTCTAACATTCCTGGTGATAATGTTAGCAGCGAATTCGGTCCAAGTGGTTTCCCATTGCTTGGATGTGCATCCAATTCACATCCCATTGGCAGCTCATTAGATTTTGCTGGTTCACAATGTCCAGTGCCCAATGATGTCCCTAAGTTGAGCACAATTGCTCAGTATGATTCAGTGGTCAGAGCGACTCAAGTGCTTCCAGTGCAACATGAGGGGAGAAATCTTGTTCATATGGACATGCAAAGTTTCAATGAGGAGCATTATATAGGAAGTGGTCAGATGCCGCTGGTGGATAATCCTCTGGAGCACTTGGAAACAGATAGCATTTTCCTCCTCAGTAATTGTAGTCCTACAGATGAGGACCTTAATGCGGCAGTCAAGCAGCGTATTAAGTGCTAG 1572 0.4307 MRLERDDHAGQIPAPEDGEKDKFPEGMRVLAVDDNSVCLRVLEAFLRQCRYRATVTTESVTALKLLRENKNHFDIVITDVHMLDMDGFKLLEIIGLEMDIPVIMMSSNDDQSTVMKGIEYGACDYLLKPIRLEEIKNIWQHVIRKTKFDTSDSNVAKVAVDRISNPNKRQNNQCREKDDANVQSDGHSSAQKRPRVAWSRELHTKFISAFEKLGPDKAVPSKLLEQMNVPGLTREKIASHLQKYRNALRKNRSQQSNIIVASNGMDERQPNTTILSFEERVPNGVNCLDDFTVNDYRNSGMIQFDHRIQSPNILSASLLKSKSLSLPPHQQNILPQQYPQAFHQSVQVRGHGNDPSNPMRMENLHHQSYLNRLKYQSFSPRNKMCKEYLDISSNIPGDNVSSEFGPSGFPLLGCASNSHPIGSSLDFAGSQCPVPNDVPKLSTIAQYDSVVRATQVLPVQHEGRNLVHMDMQSFNEEHYIGSGQMPLVDNPLEHLETDSIFLLSNCSPTDEDLNAAVKQRIKC* 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl09g01061 523 Gene3D - 189 251 - -
Eupl09g01061 523 Pfam Myb-like DNA-binding domain 195 245 IPR001005 -
Eupl09g01061 523 NCBIfam myb-like DNA-binding domain, SHAQKYF class 194 246 IPR006447 GO:0003677
Eupl09g01061 523 SMART REC_2 27 139 IPR001789 GO:0000160
Eupl09g01061 523 SUPERFAMILY Homeodomain-like 191 250 IPR009057 -
Eupl09g01061 523 Pfam Response regulator receiver domain 29 137 IPR001789 GO:0000160
Eupl09g01061 523 MobiDBLite consensus disorder prediction 164 195 - -
Eupl09g01061 523 SUPERFAMILY CheY-like 25 146 IPR011006 -
Eupl09g01061 523 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 190 249 IPR017930 -
Eupl09g01061 523 ProSiteProfiles Response regulatory domain profile. 28 143 IPR001789 GO:0000160
Eupl09g01061 523 PANTHER TWO-COMPONENT RESPONSE REGULATOR 27 307 IPR045279 GO:0009736
Eupl09g01061 523 Gene3D - 26 160 - -
Eupl09g01061 523 MobiDBLite consensus disorder prediction 1 23 - -
Eupl09g01061 523 CDD REC_typeB_ARR-like 29 143 - -
Eupl09g01061 523 FunFam Two-component response regulator 189 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl09g01061 Eupl-Chr9 21294327 21303523 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl09g01061 21 250 Response Regulator Gene Family AT4G31920 56.034 1.07e-81 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Eupl09g01061 Response_reg 1.4e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl09g01061 K14491 - nnu:104599127 459.914