Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl09g01055 ATGGGAGAGACAGACCTCTCCGCAATAATAGCCACCCTCCTATCAAGCCAGGAGCTCAACCTCGAGCTAGTACTCGAACGATCGTCGTCGTCGCCGTCGTCGTCTCTATATCCAGCCGAGCCTCGGGTTTTCTCTTGTAACTATTGCCAGAGGAAGTTTTACAGTTCACAAGCACTGGGTGGTCACCAAAACGCTCACAAGCTCGAGCGCAGCTTAGCGAAGAGAAGCCGGGAGATGAGTTCAGCCGTCCGACCGCATGCTGGGTCTAACCATCTGTCGTCCAATACTGTTGGGTGTGGGTCGAACCATAATGGACAAGGTCAGCTACCCCAACGGCACGTGGGTAGGTTTGGTGCTGAGATGGGTTATGGAAGGAGAGAAGTGCGTTATGGTTATAGTTATGGTGAAGGAGAAGGTTCTTGGCCAAAGAGTTACAGGGCGCCGGAGAACGTTCAGAAGGAGGACTTCAACCAGCTCGACTTGTCTCTCAGGCTCTGA 498 0.5301 MGETDLSAIIATLLSSQELNLELVLERSSSSPSSSLYPAEPRVFSCNYCQRKFYSSQALGGHQNAHKLERSLAKRSREMSSAVRPHAGSNHLSSNTVGCGSNHNGQGQLPQRHVGRFGAEMGYGRREVRYGYSYGEGEGSWPKSYRAPENVQKEDFNQLDLSLRL* 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl09g01055 165 MobiDBLite consensus disorder prediction 86 109 - -
Eupl09g01055 165 ProSiteProfiles Zinc finger C2H2 type domain profile. 44 71 IPR013087 -
Eupl09g01055 165 MobiDBLite consensus disorder prediction 84 111 - -
Eupl09g01055 165 SUPERFAMILY beta-beta-alpha zinc fingers 41 71 IPR036236 -
Eupl09g01055 165 ProSitePatterns Zinc finger C2H2 type domain signature. 46 66 IPR013087 -
Eupl09g01055 165 Gene3D Classic Zinc Finger 17 96 - -
Eupl09g01055 165 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 16 93 IPR044246 GO:0009788
Eupl09g01055 165 FunFam Zinc finger protein 2 23 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl09g01055 Eupl-Chr9 21198948 21201735 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl09g01055 18 165 C2H2 Transcription Factor Family AT5G57520 50.000 4.84e-24 90.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Eupl09g01055 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl09g01055 - - nnu:104599132 143.28