Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl09g01031 ATGCCTTTCTTCTCATCTATTTCCCAAAATACCCTTCCTTCGTCTTCTCCTCCTCTTCCTCTCATGGACTCTTCTCAAAACTGGCTCGCCTTCTCCCTCTCCAACTCTCACCACAACCAACACCACCACCACACGTCGGAGTCCTCACAGCTCTGTCTCTTTGAAGCCTTCAACACTACTCACTCTGTTGAGGAAGATGGAAGAGGTGGTGGTGCTGACGATCTGTCCATGCTCACCGTCGGTCCTAAACTTGAAGATTTTCTTGGTGGTTGCGGGAGTTCTGGAGGTGGAACAACTTCGTTGGGTCAGTTTTCCGGCGATAATCAGTCCGACGCAACTGGGATTTACGATTCGGAGCTGAAAACCATTGCTGCTAGCTTCTTGCGTGGGTACTCATCGATGACCGACCAGAATACTACTGAGACGGAGAAGGCTTTAACAGTGGTGGCGCCAGTACTGGACTCCTCCTCAGTTTCGAAGAAGGCCATCGATACTTTCGGACACAGAACTTCGATTTATCGAGGAGTTACCAGGCATAGGTGGACGGGGAGATATGAAGCTCATCTGTGGGACAACAGTTGTAGGAGAGAAGGGCAAAATCGGAAAGGACGACAAGTTTATTTGGGTGGTTATGATAAGGAAGACAAAGCAGCAAGAGCTTACGACCTTGCAGCTCTCAAGTACTGGGGTCCGACCACTACTACAAACTTTCCGGTAACCAACTATGAGAAGGAATTGGAAGAGATGAAGAACATGACAAGGCAGGAGTTCGTTGCTTCTCTTAGAAGAAAAAGTAGCGGGTTCTCTAGAGGAGCATCGATTTATAGAGGAGTCACAAGGCACCACCAACATGGTCGGTGGCAGGCAAGGATAGGAAGAGTTGCAGGCAACAAAGATCTCTACTTGGGAACATTTAGCACACAAGAAGAAGCAGCCGAGGCCTACGACATTGCCGCGATCAAATTCAGAGGTCTGAATGCTGTGACAAACTTCGATATGAGCCGATACGATGTGAAAAGCATTGCCAACAGCAATCTCCCCATAGGAGGAATCACAGGCAAAACCAAAGCTTCTTCGGAATCTGTTTCCGAGAACAAGAGTGGAGATGGAAGCCGATCCGACGATCGAGATCTCTTGTCGACGACGTCGGTGTCATTTACATCACAACCCACATCATCCACCAACCTTAGCTTTGCAATACCCATTAAGCAAGATCCAGCAGATTACTGGTCTCTACTTGGATTCCAAAACCCATCTCAAAATAATGCTAAGAACAGTACTAGTGCAACAGCTTTCAATATTCAATCTTCTTCGACAAATGGGTCTGCCTTCCATGGTCTTTCAAACCGAAACATGGACTTCTCTTCAGCTTCTGCAGTTAATCAAACCAACAATGGGTTCTTGAACGGTGGATTTGTTCCACAACAGAGTTCTTCAATCCCTTTTGCTTCACCTATTACTGTATCTAGTAATAACAGTTATGATATCTCTAGTTATGGTAGTTGGGTTACACCTCTTCATGCATTCCAGGCTACGAAACCCAATCTATCAGTGTTTCAGACACCCATTTTCGGTATGGAATGA 1584 0.4646 MPFFSSISQNTLPSSSPPLPLMDSSQNWLAFSLSNSHHNQHHHHTSESSQLCLFEAFNTTHSVEEDGRGGGADDLSMLTVGPKLEDFLGGCGSSGGGTTSLGQFSGDNQSDATGIYDSELKTIAASFLRGYSSMTDQNTTETEKALTVVAPVLDSSSVSKKAIDTFGHRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQNRKGRQVYLGGYDKEDKAARAYDLAALKYWGPTTTTNFPVTNYEKELEEMKNMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKSIANSNLPIGGITGKTKASSESVSENKSGDGSRSDDRDLLSTTSVSFTSQPTSSTNLSFAIPIKQDPADYWSLLGFQNPSQNNAKNSTSATAFNIQSSSTNGSAFHGLSNRNMDFSSASAVNQTNNGFLNGGFVPQQSSSIPFASPITVSSNNSYDISSYGSWVTPLHAFQATKPNLSVFQTPIFGME* 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl09g01031 527 SMART rav1_2 274 338 IPR001471 GO:0003700|GO:0006355
Eupl09g01031 527 SMART rav1_2 172 244 IPR001471 GO:0003700|GO:0006355
Eupl09g01031 527 FunFam AP2-like ethylene-responsive transcription factor ANT 171 240 - -
Eupl09g01031 527 MobiDBLite consensus disorder prediction 349 366 - -
Eupl09g01031 527 FunFam AP2-like ethylene-responsive transcription factor 273 334 - -
Eupl09g01031 527 MobiDBLite consensus disorder prediction 349 393 - -
Eupl09g01031 527 CDD AP2 273 334 IPR001471 GO:0003700|GO:0006355
Eupl09g01031 527 PRINTS Ethylene responsive element binding protein signature 314 334 IPR001471 GO:0003700|GO:0006355
Eupl09g01031 527 PRINTS Ethylene responsive element binding protein signature 173 184 IPR001471 GO:0003700|GO:0006355
Eupl09g01031 527 CDD AP2 171 240 IPR001471 GO:0003700|GO:0006355
Eupl09g01031 527 SUPERFAMILY DNA-binding domain 273 334 IPR016177 GO:0003677
Eupl09g01031 527 ProSiteProfiles AP2/ERF domain profile. 274 332 IPR001471 GO:0003700|GO:0006355
Eupl09g01031 527 MobiDBLite consensus disorder prediction 377 393 - -
Eupl09g01031 527 Pfam AP2 domain 274 324 IPR001471 GO:0003700|GO:0006355
Eupl09g01031 527 Pfam AP2 domain 172 230 IPR001471 GO:0003700|GO:0006355
Eupl09g01031 527 ProSiteProfiles AP2/ERF domain profile. 172 238 IPR001471 GO:0003700|GO:0006355
Eupl09g01031 527 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 81 421 - -
Eupl09g01031 527 SUPERFAMILY DNA-binding domain 171 239 IPR016177 GO:0003677
Eupl09g01031 527 Gene3D AP2/ERF domain 274 334 IPR036955 GO:0003700|GO:0006355
Eupl09g01031 527 Gene3D AP2/ERF domain 172 240 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl09g01031 Eupl-Chr9 20872477 20875607 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl09g01031 112 527 AP2-EREBP Transcription Factor Family AT5G57390 57.931 5.39e-157 453
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Eupl09g01031 AP2 3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl09g01031 K09285 - nnu:104603172 703.36