Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl09g01012 ATGAACATCTCAAGTGGTGCTGAGGCTTGTGTGTGTGAGAACTGGAACAACGACAACCCTTCCATGGTGTCCTTTATAGGGTTAGAAAGCAACAATCAAAAGCAGTTTTGGGATTGGGAGACCAACAATCACACAGCCACCACCACCCCCAACAATAACAACAACAACAATGTAAACCCTTTCATCAACCCCACAACCAACATCTTTGATGGCAGTAGCCTTTCTTCTTCTTCTCCTTCAACTCTTTCTGGAAATTTCTTCCCTTACTCCCAATTTGCCGACTACCCATCAGCCAGTTTCTTGAAAAAAGAAGATGACAACTTTGGTGTTGATGGGGGCAACTACTATGTTACTGGTGGGAGAGTTGGGTTGAATCTTGGCCATCGAACTTACTTTTCATCGAGAGAGACTGCTGTGATCGATCGGCTTTTCAGGAGGCCTAGAGGGTTTTATCAGGCGAATCAGGTCCCTCGATGCCAAGCTGAAGGTTGTAAGCTTGATCTTACCAACGCCAAGCACTATCATAGGAGGCATAAGGTTTGTGAGTTTCACTCTAAGGCCACTAAGGTTGTAGCTGGTGGGCTAGAACAGCGCTTCTGTCAGCAATGCAGCAGGTTTCATGTTTTGGCAGAGTTCGATGATGCAAAGAGGAGCTGTAGGAAACGCTTGGCCGATCACAATCGGCGTAGAAGAAAGCCTCAATCCGGTCCATCAGATTCAGTACTTGCTAAACCTGCTGAAAACGCATTCCCACAGGTGGGTTCATCGGCTTCGAGATTGGAACTGAAGGAGACGTCCCTATCTTCATCATCAACTCTTCCCTTGATGAACAAAGCAAATACCATGACTGCTGCTGATACTTCTTCTGCTAAAGACGCAGTTACCCACTTCACCAATGGTCCTGCCTTGTCTCTTGGTGGTGGTTTCATCTTCAACTCCACTCCCTTGTTTCAGAGGGAGAACAGTGTTTCTCCTTATCATAATCTCTTCTTCTCTAGCTCCAACGAGGTTTCACAGTCAACAGGAGGTGGGTCGGACCAGAGCCAGCATCCGGAGGACTTGCAGAATCTACTGCATTTACGTCAAGCCATGTTTGAAGTTGAGTTGCTCTGA 1113 0.4672 MNISSGAEACVCENWNNDNPSMVSFIGLESNNQKQFWDWETNNHTATTTPNNNNNNNVNPFINPTTNIFDGSSLSSSSPSTLSGNFFPYSQFADYPSASFLKKEDDNFGVDGGNYYVTGGRVGLNLGHRTYFSSRETAVIDRLFRRPRGFYQANQVPRCQAEGCKLDLTNAKHYHRRHKVCEFHSKATKVVAGGLEQRFCQQCSRFHVLAEFDDAKRSCRKRLADHNRRRRKPQSGPSDSVLAKPAENAFPQVGSSASRLELKETSLSSSSTLPLMNKANTMTAADTSSAKDAVTHFTNGPALSLGGGFIFNSTPLFQRENSVSPYHNLFFSSSNEVSQSTGGGSDQSQHPEDLQNLLHLRQAMFEVELL* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl09g01012 370 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 53 346 IPR044817 GO:0003677
Eupl09g01012 370 Pfam SBP domain 159 232 IPR004333 GO:0003677
Eupl09g01012 370 MobiDBLite consensus disorder prediction 223 263 - -
Eupl09g01012 370 FunFam Squamosa promoter-binding-like protein 14 150 220 - -
Eupl09g01012 370 Gene3D - 154 220 IPR036893 GO:0003677|GO:0005634
Eupl09g01012 370 ProSiteProfiles Zinc finger SBP-type profile. 156 233 IPR004333 GO:0003677
Eupl09g01012 370 SUPERFAMILY SBT domain 157 235 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl09g01012 Eupl-Chr9 20540287 20543626 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl09g01012 124 234 SBP-box Gene Family AT1G27370 55.200 3.63e-38 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Eupl09g01012 SBP 6.2e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl09g01012 - - tss:122667674 469.544