Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl09g01003 ATGGATGAGTTCACTGGTAAGAGAGCTGTTGCTGGGCTTGGTGTTGCTAGAAGGGGATCTGGCCTTGCTTTCAGAGATACATCAAACAATGAGGATCGGAGTGTTCAACATTGCAACCGACTGGGTTGCAGCACTAGACTTAACTCCATGAAAAGCACCCAAGTTGGTAGTTCAGACAGGGCTAAGCACTCAAGACCTGGCTTGCATTCTACAAGTGGCAAAGCAATAGTTGGGAGCTCCTCTAAAACATATCCTGCTTTGAACGGCCTTAGAAAGTCTCACCAGGAACCCCAGAACCCATCTTCTCGTAAAGAAACAGTATCTATTGAAAGCAGCAACAAGCAGTTGCAGAAAGAAGTTTCAGAACCAAGCCCCTCAACTGCAATGATTCAGACAGGACTCCCTGAATCCAAAGATGCTGAATCTGGAGTTCTCAGTGGAGTTTCTGTAGATACACCAGAGTCCAGTTTAACACCAAAGACACGAACTTGGAAGCAAATCCATAAACGATCTGAACTGGGCAAGCAGGATACTTCTTTTGGTTCCTCCACCCGACGTTCTTTTGCACCTAGAAACACCAGCCAAGCTGCAAAACCTGCCTCCCATGGTCAGGGGGCTAATGCAAGCAGATATGGTCTCAGAAATCTTGGATGCACATCCATATCTGATGTCCTTTCTCCAGGTTGTTCATCTTCTGATTCAAGTCGTAATAGAAGGACCGAAGTATTAAAAAGGAGATGTCCTGATGGAGAGTGTTCTGCTGTTAGAGGGAAGATTATGAGTGGGACATCAAGTGGAGGAAATTCAGGCAGTCAGGGAAATCGCCCCTCCAGCCCTAGCCTCTCTCTTTCTGAACGTCCATCATCTCAAGAAGCTTCGAGAAGGACCAGAAATTGGCCTCCAAGCAGGGATGGTATTATATCAGTTAGAACTCGGAGGACAATCAATGGGGACACCAGCGCAAGGATCTCTGAACATGGCAATAGCAATAGTCTATCACTGCCAGAACCCCCCGTTGTGATTCCACAACTGCCTCAAACTGAATTCTCTATCAGTGGGTCTAGACCACCTAGTTCATCACAACAATCTCCAGCAGAACTTTCCACAATTCGCCAGAGTTCTTATGGTCGACCTCGTAGTAGCAATGAGAATGTACGCAATCGGCCAATTGCTAATCCAGAAGATGGCAGTTCCCTGCAGTTACACGGCCTCTCAATCGATCGAGATGGCTTCCGACGCTTTAACATGGATGGGATTGGAGAGGTATTGCTCGCACTAGAGAGGATTGAACAAGACGAGGAGCTCACATATGAGCAATTATTGATTCTGGAGACAAATTTGTTCTTGGGTGGCCTTAGCTTTCATGATCAACACAGGGATATGAGACTGGATATCGATGACATGTCATATGAGGATTTGTTAGCTTTGGAGGAGAAAATGGGTACAGTCAGCACAGCCCTTTCGGAAGAAGCATTGTCAAACTGTCTCAAGAGGAGCTCTTATATGCCTGCATCTCCAGACGACACACAGAGCATGGACTGCGGGGAGGATGATGTCAAATGTAGTATTTGTCAGGAAGAATATGTCGAGGGAGATGAGGTGGGAAAATTAGGGTGCGATCATCGGTATCATATGGTTTGTATCCATCAATGGCTGCAACAGAAAAACTGGTGCCCGATCTGCAAGGCTCCTGCAGCACCTTCCTAG 1707 0.4663 MDEFTGKRAVAGLGVARRGSGLAFRDTSNNEDRSVQHCNRLGCSTRLNSMKSTQVGSSDRAKHSRPGLHSTSGKAIVGSSSKTYPALNGLRKSHQEPQNPSSRKETVSIESSNKQLQKEVSEPSPSTAMIQTGLPESKDAESGVLSGVSVDTPESSLTPKTRTWKQIHKRSELGKQDTSFGSSTRRSFAPRNTSQAAKPASHGQGANASRYGLRNLGCTSISDVLSPGCSSSDSSRNRRTEVLKRRCPDGECSAVRGKIMSGTSSGGNSGSQGNRPSSPSLSLSERPSSQEASRRTRNWPPSRDGIISVRTRRTINGDTSARISEHGNSNSLSLPEPPVVIPQLPQTEFSISGSRPPSSSQQSPAELSTIRQSSYGRPRSSNENVRNRPIANPEDGSSLQLHGLSIDRDGFRRFNMDGIGEVLLALERIEQDEELTYEQLLILETNLFLGGLSFHDQHRDMRLDIDDMSYEDLLALEEKMGTVSTALSEEALSNCLKRSSYMPASPDDTQSMDCGEDDVKCSICQEEYVEGDEVGKLGCDHRYHMVCIHQWLQQKNWCPICKAPAAPS* 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl09g01003 568 ProSiteProfiles Zinc finger RING-type profile. 521 562 IPR001841 -
Eupl09g01003 568 MobiDBLite consensus disorder prediction 23 60 - -
Eupl09g01003 568 SMART ring_2 521 561 IPR001841 -
Eupl09g01003 568 MobiDBLite consensus disorder prediction 312 336 - -
Eupl09g01003 568 MobiDBLite consensus disorder prediction 223 398 - -
Eupl09g01003 568 MobiDBLite consensus disorder prediction 345 394 - -
Eupl09g01003 568 FunFam E3 ubiquitin-protein ligase arkadia 484 567 - -
Eupl09g01003 568 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 506 568 IPR013083 -
Eupl09g01003 568 MobiDBLite consensus disorder prediction 73 133 - -
Eupl09g01003 568 MobiDBLite consensus disorder prediction 148 162 - -
Eupl09g01003 568 SUPERFAMILY RING/U-box 515 565 - -
Eupl09g01003 568 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 68 566 IPR045191 GO:0061630
Eupl09g01003 568 MobiDBLite consensus disorder prediction 176 202 - -
Eupl09g01003 568 MobiDBLite consensus disorder prediction 237 252 - -
Eupl09g01003 568 MobiDBLite consensus disorder prediction 1 210 - -
Eupl09g01003 568 Pfam Ring finger domain 520 562 IPR001841 -
Eupl09g01003 568 MobiDBLite consensus disorder prediction 258 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl09g01003 Eupl-Chr9 20376855 20380542 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl09g01003 403 565 C3H Transcription Factor Family AT2G15530 42.945 1.63e-37 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl09g01003 - - ming:122062115 645.195