Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl09g00952 ATGAAGATTCATATTTCCCAATTTCTAGTCTGGTTCTTATTCTCTAGCCTTTGCTGCATAGGGGCAGCACCTCGTAACAAGTGTATAAATGTAGGGGTGATTTTGGATTTGGGAACATTGGTAGGGATGACGAGCAACAGTTGCCTTTCCATGGCCGTCGCCGACTTCTATGCTGTTCACGATGATTATAGGACGAGGCTAGTTCTACACACCAGGGATTCCGAGAAGGACGTTGTCACCTCTTTTTTTGCAGGGCTGGGAATCTCTCAGATGGGTCCGAAACTATTGAAAGCAATCTTAACAACTGAATTTAAAGGTTTGAGTGGTGAAATACGTCTAGTCAATCGACAATTGCAACCACAAGTCTTCCAGATACTCAATGTGATTGGTAAAGGGGAGCGACCAATTGGATTCTGGATGCCTACAATTGGAATTTCGCAGGGATTGGATGTGAGTAGAACGAAAATGTACTCGACCTCAAAATCCGATCTTCGGGCTATCATTTGGCCAGGAGGATCAACGACCGTGCCCAAGGGTTGGGTGATTCCAACTGCTGGAAAGAAGCTAAGGGTAGCAGTTCCAGTGAAAGATGGTTTTAATGAATTTGTGAAAGTGGAATGGGACCCTAGCACCAATGCAACAATAGTCACTGGATATTGCATAGAAATTTTCAATTCGGTAATGGAAGCCTTACCTTATGCCGTCCCTTATGAATTTATTCCCTTTCAGAAGCCTAATGGTGAGAATGCTGGGGATTGCGATGATCTAGTTTACCAAGTTTATCTTCAGGAATACGATGCTGCGGTTGGAGATATTACAATCACGGCCAATCGATCATCGTTCATTGATTTTTCTCTACCTTTCACCATTGGGGGGGTGTCAATGATTGTGCCTTCCAAATACGTGAATAGAAAGAACATGTGGATCTTCTTCAAACCTATGACTTGGGATCTTTGGCTTCTAGGTGGTGGATTTTTCATCTTCATTGGCGTAGTGGTTTGGGTTTTCGAATATCTGAGAAACTCAAATCCTGGTGGACCTCCTATTCGGCAGATTATCAGGCACCTCATTAGTCCATCTCCGACCCTCTTCTTCACACAAGGAGAGAAAGATTTAACAAACGTGTCAAAGTTTATTCTGAGCTTATGGGGTGTACTATGTGTGATTCTGGGTGCTTCTTACATTGCAAGCTTAACATCAATGCTAACAGTTCAAAGTCTCCAACTTACTGCTCCAGACGTAAAAGATCTTATAAAGAACGGAGACTATGTGGGCTACCAGAAGGGGTCCTTCGTAGCAGGAATCCTAAAGCAATTGAAATTTGATGAGTCCAAGCTCCGGGTCTATAACTCTCTGGAAGAGTATGATGAGGCCCTAACCAAAGGAAGTCAGAATGGTGGTGTTGCTGCCATTATGGATGAGATCACATACGTCAAGCTCCTCTTGGAAAAGTATTGCAATAAATACACTATGGTTGGACTGACCCACAGGATGGACGGATTTGGCTTTGTTTTCCAAAGAGGGTCCCCTCTGGTGGCTGACGTTTCTAGGGCAATATCATCAGTACTAGAAGGAGAAAGAATGGTGGAGATCGAGAAGGCATGGTTTGGACGTGAAAGTACTTGTCCAGAGCCAAGCAATACTGTCTCCTCCAACAGTCTCTCTGTCGACACCTTTTTGGGGCTCTTCCTCATCCTCGGAATTGTCATACTTGTTGCTCTTATAGTATCCGTTCTAGCTTACATACACAGGCATTCAAACATACCATTTTGGAAATACCTCAGAGCCAGATGTGGATTGAATCAGGAACAATCCACCCCACGTAATGAAGGAGTTAATGAGACAACTCAATCAGGAACAGTTCCTATAAGTAATGAAGAAGCTGATGAGGAAAATTCGGAAACGGTAAGAGCTACAGCAGCTGAGGAAAGCCAAGAAGAAGGCGACCTCCCACAGTCCTCCAATCATCTCTGA 1974 0.4387 MKIHISQFLVWFLFSSLCCIGAAPRNKCINVGVILDLGTLVGMTSNSCLSMAVADFYAVHDDYRTRLVLHTRDSEKDVVTSFFAGLGISQMGPKLLKAILTTEFKGLSGEIRLVNRQLQPQVFQILNVIGKGERPIGFWMPTIGISQGLDVSRTKMYSTSKSDLRAIIWPGGSTTVPKGWVIPTAGKKLRVAVPVKDGFNEFVKVEWDPSTNATIVTGYCIEIFNSVMEALPYAVPYEFIPFQKPNGENAGDCDDLVYQVYLQEYDAAVGDITITANRSSFIDFSLPFTIGGVSMIVPSKYVNRKNMWIFFKPMTWDLWLLGGGFFIFIGVVVWVFEYLRNSNPGGPPIRQIIRHLISPSPTLFFTQGEKDLTNVSKFILSLWGVLCVILGASYIASLTSMLTVQSLQLTAPDVKDLIKNGDYVGYQKGSFVAGILKQLKFDESKLRVYNSLEEYDEALTKGSQNGGVAAIMDEITYVKLLLEKYCNKYTMVGLTHRMDGFGFVFQRGSPLVADVSRAISSVLEGERMVEIEKAWFGRESTCPEPSNTVSSNSLSVDTFLGLFLILGIVILVALIVSVLAYIHRHSNIPFWKYLRARCGLNQEQSTPRNEGVNETTQSGTVPISNEEADEENSETVRATAAEESQEEGDLPQSSNHL* 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl09g00952 657 MobiDBLite consensus disorder prediction 604 657 - -
Eupl09g00952 657 SMART GluR_14 188 538 IPR001320 GO:0015276|GO:0016020
Eupl09g00952 657 FunFam Glutamate receptor 88 187 - -
Eupl09g00952 657 MobiDBLite consensus disorder prediction 604 626 - -
Eupl09g00952 657 Pfam Bacterial extracellular solute-binding proteins, family 3 216 537 IPR001638 -
Eupl09g00952 657 Gene3D - 307 446 - -
Eupl09g00952 657 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 80 613 IPR015683 -
Eupl09g00952 657 FunFam Glutamate receptor 453 501 - -
Eupl09g00952 657 CDD GluR_Plant 187 536 - -
Eupl09g00952 657 SUPERFAMILY Periplasmic binding protein-like II 165 538 - -
Eupl09g00952 657 SUPERFAMILY Periplasmic binding protein-like I 89 182 IPR028082 -
Eupl09g00952 657 MobiDBLite consensus disorder prediction 630 644 - -
Eupl09g00952 657 FunFam Glutamate receptor 188 307 - -
Eupl09g00952 657 Pfam Ligand-gated ion channel 538 569 IPR001320 GO:0015276|GO:0016020
Eupl09g00952 657 Gene3D - 188 306 - -
Eupl09g00952 657 Gene3D - 89 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl09g00952 Eupl-Chr9 19527184 19532366 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl09g00952 47 619 Ion Channels AT5G11210 41.667 5.44e-151 456
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl09g00952 K05387 - nnu:104606995 563.918