Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl09g00950 ATGGGTGAAGAAGTCAAGGCAGGGCTTGTAGTTCCCGAGTCTGTATTGAAGAAGAGAAAGAGGAGCGAGGAATGGGCACTGGCGAAGCAGCAGCAGCTCGAAGCTACCAAGAAGAAGAATGCTGAGAACCGGAAGCTGATTTTCAACCGAGCTCAGCAGTACGCAAAGGAGTACGAGGAGCAGCAAAAGGAGCTAATTCAGTTGAAGCGTGAGGCGAAGTTGAAAGGAGGGTTCTATGTTAACCCAGAGGCTAAGCTGATATTTATTATCCGAATTCGTGGTATTAATGCCATGCACCCGAAGACCAAAAAGATTTTGCAGCTCTTGCGTTTGAGACAGATATTTAATGGCGTGTTTCTGAAAGTGAACAAAGCGACAATGAACATGCTGCAAAGAGTGGAGCCTTACGTTACCTATGGATATCCCAATCTGAAGAGCGTCAGAGAATTGATTTACAAGAGGGGTTATGGGAAGCTAAACAAGCAGAGAATTGCTTTAACTGACAATTCTATTATCGAACAGGGTCTGGGTAAGTATGGCATCATATGCATAGAAGATCTTGTCCACAAGATCATGACAGTTGGACCCCACTTCAAGGAAGCTAACAACTTCCTATGGCCATTTAAGCTTAAGGCACCATTGGGCGGCCTTGAAAAGAAGAGGAATCATTACGTCGAAGGAGGTGATGCCGGAAACCGTGAAGATTACATCAACGAGCTCATCAGGAGGATGAATTAG 738 0.4512 MGEEVKAGLVVPESVLKKRKRSEEWALAKQQQLEATKKKNAENRKLIFNRAQQYAKEYEEQQKELIQLKREAKLKGGFYVNPEAKLIFIIRIRGINAMHPKTKKILQLLRLRQIFNGVFLKVNKATMNMLQRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRIALTDNSIIEQGLGKYGIICIEDLVHKIMTVGPHFKEANNFLWPFKLKAPLGGLEKKRNHYVEGGDAGNREDYINELIRRMN* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl09g00950 245 Pfam Ribosomal protein L30p/L7e 87 137 IPR016082 -
Eupl09g00950 245 Coils Coil 48 75 - -
Eupl09g00950 245 PANTHER 60S RIBOSOMAL PROTEIN L7 10 245 IPR039699 -
Eupl09g00950 245 Pfam Ribosomal L30 N-terminal domain 11 81 IPR012988 -
Eupl09g00950 245 NCBIfam 60S ribosomal protein uL30 12 245 IPR005998 GO:0000463|GO:0003735|GO:0022625
Eupl09g00950 245 Gene3D - 86 189 IPR036919 -
Eupl09g00950 245 Gene3D - 190 245 IPR036919 -
Eupl09g00950 245 FunFam 60S ribosomal protein L7 86 190 - -
Eupl09g00950 245 FunFam 60S ribosomal protein L7 191 245 - -
Eupl09g00950 245 SUPERFAMILY Ribosomal protein L30p/L7e 86 245 IPR036919 -
Eupl09g00950 245 CDD Ribosomal_L7_archeal_euk 86 245 IPR035808 -
Eupl09g00950 245 ProSitePatterns Ribosomal protein L30 signature. 105 137 IPR018038 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl09g00950 Eupl-Chr9 19499665 19501630 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl09g00950 4 245 Cytoplasmic Ribosomal Protein Gene Family AT3G13580 83.884 8.31e-156 431
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl09g00950 K02937 - mof:131152931 450.284