Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl09g00943 ATGCCAGCTATCCCGATAACATCCCATCATAATAATAGGGGGTTATCTGATGTTCCACAGCGGTTAAACGTTCCCCAGAGACTGGCTTCGTTGATCAGATTCCGTGAGAAGCGAAAAGAGCGAAATTTTGATAAGAAGATTCGTTACACAGTTCGTAAAGAGGTAGCCCTAAGGATGCAACGACACAAGGGTCAGTTCACATCTTCAAAGCCTACTCAAGATGAATCTGGATCAGCATTAACAAATTGGGATTCCACCCGCTGGGGTTCGGATGCTAATGGATCCCAACCAGAGACTGCCTGTCGCCACTGTGGCATCAGTCAGAAATCTACCCCAATGATGCGGCGTGGACCTGATGGACCAAGGACCCTTTGCAATGCATGTGGACTTATGTGGGCAAATAAGGGAACTCTGAGAGACCTCTCGAAGTCTGTGGCCTTACCCATACAAACCAATCCTTCTGCGAACTCCATTATCGAGGAGCATAGAGCCGCGGAGTCTGATCGCAACGGTAACGATTCGTCGTGA 528 0.4848 MPAIPITSHHNNRGLSDVPQRLNVPQRLASLIRFREKRKERNFDKKIRYTVRKEVALRMQRHKGQFTSSKPTQDESGSALTNWDSTRWGSDANGSQPETACRHCGISQKSTPMMRRGPDGPRTLCNACGLMWANKGTLRDLSKSVALPIQTNPSANSIIEEHRAAESDRNGNDSS* 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl09g00943 175 MobiDBLite consensus disorder prediction 63 100 - -
Eupl09g00943 175 PANTHER GATA TRANSCRIPTION FACTOR 28 1 164 IPR045280 GO:0006355
Eupl09g00943 175 CDD ZnF_GATA 100 153 IPR000679 GO:0006355|GO:0043565
Eupl09g00943 175 SMART GATA_3 95 148 IPR000679 GO:0006355|GO:0043565
Eupl09g00943 175 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 97 147 - -
Eupl09g00943 175 Gene3D - 91 154 IPR013088 GO:0006355|GO:0008270
Eupl09g00943 175 MobiDBLite consensus disorder prediction 161 175 - -
Eupl09g00943 175 ProSitePatterns GATA-type zinc finger domain. 101 128 IPR000679 GO:0006355|GO:0043565
Eupl09g00943 175 MobiDBLite consensus disorder prediction 156 175 - -
Eupl09g00943 175 Pfam GATA zinc finger 101 137 IPR000679 GO:0006355|GO:0043565
Eupl09g00943 175 ProSiteProfiles GATA-type zinc finger domain profile. 95 152 IPR000679 GO:0006355|GO:0043565
Eupl09g00943 175 Pfam CCT motif 27 69 IPR010402 GO:0005515
Eupl09g00943 175 ProSiteProfiles CCT domain profile. 27 69 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl09g00943 Eupl-Chr9 19348872 19369249 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl09g00943 9 156 Tify Gene Family AT1G51600 64.968 5.44e-66 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Eupl09g00943 CCT 1.4e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl09g00943 - - psom:113358647 255.373