Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl09g00929 ATGTCCGATCTAACAGTGAAATTCAGCGTTCTTTGCAGCTTGTTCAATTGGATGCAGCGAAGCAAATCGGCCACTAAGAAGCGTTCAAAATTCCGTAAATTTCTCGACAACTTCTGCAAATCCGGCGACGATTACTTCAGTGCTATCCGGTTGATTCTTCCCTCTCTGGACCGAGAGAGGGGGACTTACGGATTGAAGGAATCCGTACTGGCCACTTGCCTCATTGACGCCCTCGGAATGTCGAGGGAGTCCGAGGACGCTCTTCGCCTTGTCAATTGGCGCAAGGGCGGTGCTAAGACCGGTGCCAATGTCGGCAATTTCGCCCTCGTCGCCGCTGAGATACTACAGCGCAGGCAAGGCATGATTTCTGGTGGACTAACGATCAAAGACTTAAACGACTCGCTTGATCGCCTGGCTTCGAGCGAAAATAGGGTGGAAAAGACTTCTGTTCTTTCTGATCTCATCAAGAATACAAATGCGCAGGAAATGAAGTGGATTGTCATGATCATTCTTAAAGATTTGAAGCTAGGAGTTAGTGAAAAGAGCATTTTTCATGAATTTCATCCAGACGCTGAAGACTTGTTCAATGTCACTTGTGACTTAAAATTAGTTTGTGAAAAGCTAAAGGACCGAAGTCAACGGCACAAACGCCAGGACATAGAAATTGGAAAAGCAGTGCGCCCTCAACTAGCTCTGAGAGTTAGTGATGCTACTTCTGCATGGAAAAAGCTTCATGGAAAAGAAGTGGTTGTCGAGTGCAAATTTGATGGTGATCGCATTCAAATTCATAAGAATGGAGCAGAGATACGCTTCTTCTCAAGGAACTTTCTTGACCATCCTGAATATGGACATGCAATATCAGACATTATTATACAAAATATCTTGGTTGATAGGTGCATCCTTGATGGTGAAATGTTGGTATGGGACACATCTACCAATCGTTTTGCAGAGTTTGGCTCAAATCAAGAAATAGCAAAGGCAGCAAAAGAAGGATTGGATAGTGATCGACAGTTATGCTATGTTGCATTTGATATTCTTTATGTTGGAGACACCAGTGTTATCCATCAGAGCTTGAAGGAGCGTCATGAGCTTCTCCAGAAAGTTGTAAAGCCTTTGAAGGGTTGCTTGGAAATTTTAGTGCCCAATGGTGGTCTTAATGCCCATTGCCCTTCAGGGGAACCATGCTGGTCGCTAATTGTATATAATGTGGAAGAAGTTGAAAGATTTTTCAAAGCAACCATTGAAAATAGAGATGAAGGAATTGTATTGAAAGACCTTGGTTCTAAATGGGAACCTAGTGATCGGAGTGGAAAGTGGTTAAAGTTGAAGCCCGATTACATACGTGCTAGTTCTGATCTGGACGTCCTGATTATAGGGGGATACTATGGTACTGGACGTCGTGGAGGGGAGGTAGCTCAATTTTTGGTGGGTCTTGCAGAGCGTTCAGCCCCTAACACCTACCCCAGACGATTTATTTCATTTTGTAGAGTGGGTTCTGGCCTTTCTGATGACGAGCTTGATGCTCTCATTACAAAATTGAAGCCCTATTTCAGGAAAAATGAGTACCCAAAGAAGACACCAAGCTTTTATGAAGTAACAAATAATTCAAAGGAGAGGCCAGATGTTTGGATTGATAGCCCTGAAAAGTCAATCATACTTTCCATAGCTAGTGATATCCGAACAATCAGGTCTGAGGTATTTGCTGCACCACACAGTTTGAGATTCCCCCGCATTGAGCGTGTGAGATATGACAAGCCTTGGCATGAGTGCCTTGACGTGCAATCTTTTGTGGACTTGGTGCATTCAAGCAATGGTAATACACAAAGGGGGACAGACTATGGAGGCTTGCAAGATAATAAACCAAAACGAATAAAATCCTCAAGAAAGGGAGACAAGAAGAACCTTTCTGTTGTTCCTTCTCATTTCCTTCAGACGGATGTCTCTGGAGTAAAGGAGGCGACCTTCATATTTGCAAACATGATGTTTTACTTCATCAATGCGCCTCCAAACCATTCTCTAGATTCTTTCCACAAAATGGTGGCTGAAAACGGGGGAGCTTTCTCAATGAATCTTAATGACTCAGTTACTCACTGTATTGCTGCTGAAAAAAAAGGGATCAAATATCAGGCAGCTAAGCTTCATGGAGATATTATTCACTACTCTTGGGTCTTGGATTGTTGCTTGCAAAAGCGTCTCCTGCATTTACAGCCAAAGTACTTCCTTTTCCTTGCGGACTCGTCGAAGAACAAGTTACAAGAGGAAATTGATGAATTCTCTGACTCTTATTACTGGGATCTTGATCTTACAGACATAAAACAGCTTTTCAACAACATGGACAGAGTGGAAGATCCCAAAAGTATTGACTATTATAAGAAAAAGTACTGTCCGAAGGAGAAATGGTCTCAATTTCAGGATTGCTGCATTTACTTGTACCGTTCAATGCTCTCAATAAATACAGATTGGGAAGTCTTATTGGAGCTTGCTCTGAGGAGGATGAGGCTTGAAGTTTCTATGCGTGGCGGCGAAGTCGGCAACAATCTTTCGCATGCTACTCATTTGGTAGTCTTGTCAGTACCAGGGTCCGATGTAGACTTTGATACTCTATTCAAAAGTTTCTCAGCAGCAGAGAGACATCTCCTACGCAGCAAAAGGTTGCATGTTGTTGGGTATCAATGGCTGGAGGATTCCTTGGAGAAGGATCGGAAGTTACCAGAGGAGACGTATGGCTTGAAGCCTCACAGCTTAGAAGAATCAAATTTTGTAGAGAGCAATCTTGGATTAGAAGAACATGTAGAAAACCAGAATAGCTCAGCTTCTCCTGATAAGGATCGAAAGTGGAGTAGAGGCAGACCTGTGGTAGAAAACCAGAGATTCTCATCATCATCCGATAGGGATGGAAAACGGAAAAGAGGCAGACCCACCCGCACAAACACGAAGAGAGGAAGAACGGCTTTCAGCCAACCTCGAAGAACACGGGCAAGGCTTGGAAGCAGGCCTGCTAAAATAGATGAAAATGAATCAGAAAACGGTGCTTCCTCAGATGGTAGCACATATAGGCAACACATTGTTTCGAGTGAAGGGTATCATGCAAATCAAGGAATGTTGGAGAAGGGAGATGATGGAGCCAAGGAGAGTGAAGGAGCAGGAGTTTTTGATGGATCTTATGGAAACAAAGTGACTGAATGGTCTGATAAAGCTTATGCAATTGAATTGGATGATCGAAATGACATCCTAGACGATGAAAAGGCAGAAGGGTCTCGTAACATGCATGAAATCAAAGGAGAAGAAAACAACGATACTTCAGGAAAGCTGGAAATTATGGTTGATCCACTTCAAGCTATGTTATTAGACATGATACCGAGCCTTGGGGTGAAGAAAGCTGAAACTGCAAAATCTGTTCTTGAAGGTGAGGAACCTCGGGTAGACCCTGATGCAGAACCAGTGCAGAAGAAGAAGAAGAAGGTCAGCTATAAGGATGTTGCGGGTGAGCTTCTGAAGGATTGGTAA 3507 0.4328 MSDLTVKFSVLCSLFNWMQRSKSATKKRSKFRKFLDNFCKSGDDYFSAIRLILPSLDRERGTYGLKESVLATCLIDALGMSRESEDALRLVNWRKGGAKTGANVGNFALVAAEILQRRQGMISGGLTIKDLNDSLDRLASSENRVEKTSVLSDLIKNTNAQEMKWIVMIILKDLKLGVSEKSIFHEFHPDAEDLFNVTCDLKLVCEKLKDRSQRHKRQDIEIGKAVRPQLALRVSDATSAWKKLHGKEVVVECKFDGDRIQIHKNGAEIRFFSRNFLDHPEYGHAISDIIIQNILVDRCILDGEMLVWDTSTNRFAEFGSNQEIAKAAKEGLDSDRQLCYVAFDILYVGDTSVIHQSLKERHELLQKVVKPLKGCLEILVPNGGLNAHCPSGEPCWSLIVYNVEEVERFFKATIENRDEGIVLKDLGSKWEPSDRSGKWLKLKPDYIRASSDLDVLIIGGYYGTGRRGGEVAQFLVGLAERSAPNTYPRRFISFCRVGSGLSDDELDALITKLKPYFRKNEYPKKTPSFYEVTNNSKERPDVWIDSPEKSIILSIASDIRTIRSEVFAAPHSLRFPRIERVRYDKPWHECLDVQSFVDLVHSSNGNTQRGTDYGGLQDNKPKRIKSSRKGDKKNLSVVPSHFLQTDVSGVKEATFIFANMMFYFINAPPNHSLDSFHKMVAENGGAFSMNLNDSVTHCIAAEKKGIKYQAAKLHGDIIHYSWVLDCCLQKRLLHLQPKYFLFLADSSKNKLQEEIDEFSDSYYWDLDLTDIKQLFNNMDRVEDPKSIDYYKKKYCPKEKWSQFQDCCIYLYRSMLSINTDWEVLLELALRRMRLEVSMRGGEVGNNLSHATHLVVLSVPGSDVDFDTLFKSFSAAERHLLRSKRLHVVGYQWLEDSLEKDRKLPEETYGLKPHSLEESNFVESNLGLEEHVENQNSSASPDKDRKWSRGRPVVENQRFSSSSDRDGKRKRGRPTRTNTKRGRTAFSQPRRTRARLGSRPAKIDENESENGASSDGSTYRQHIVSSEGYHANQGMLEKGDDGAKESEGAGVFDGSYGNKVTEWSDKAYAIELDDRNDILDDEKAEGSRNMHEIKGEENNDTSGKLEIMVDPLQAMLLDMIPSLGVKKAETAKSVLEGEEPRVDPDAEPVQKKKKKVSYKDVAGELLKDW* 1169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl09g00929 1168 SUPERFAMILY BRCT domain 788 912 IPR036420 -
Eupl09g00929 1168 Gene3D - 448 606 IPR012340 -
Eupl09g00929 1168 Pfam DNA ligase N terminus 7 188 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Eupl09g00929 1168 MobiDBLite consensus disorder prediction 930 1018 - -
Eupl09g00929 1168 ProSiteProfiles ATP-dependent DNA ligase family profile. 331 480 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Eupl09g00929 1168 FunFam DNA ligase 799 910 - -
Eupl09g00929 1168 SMART BRCT_7 654 730 IPR001357 -
Eupl09g00929 1168 SMART BRCT_7 807 900 IPR001357 -
Eupl09g00929 1168 Pfam ATP dependent DNA ligase C terminal region 467 585 IPR012309 GO:0003910|GO:0006281|GO:0006310
Eupl09g00929 1168 MobiDBLite consensus disorder prediction 1133 1152 - -
Eupl09g00929 1168 MobiDBLite consensus disorder prediction 1032 1055 - -
Eupl09g00929 1168 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 187 445 - -
Eupl09g00929 1168 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 5 208 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Eupl09g00929 1168 ProSiteProfiles BRCT domain profile. 798 910 IPR001357 -
Eupl09g00929 1168 Gene3D DNA ligase/mRNA capping enzyme 222 445 - -
Eupl09g00929 1168 PANTHER DNA LIGASE 4 4 1161 IPR029710 GO:0003677|GO:0003910|GO:0005524|GO:0006281|GO:0051103
Eupl09g00929 1168 Gene3D BRCT domain 799 909 IPR036420 -
Eupl09g00929 1168 SUPERFAMILY Nucleic acid-binding proteins 452 601 IPR012340 -
Eupl09g00929 1168 Gene3D - 2 220 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Eupl09g00929 1168 Gene3D BRCT domain 666 783 IPR036420 -
Eupl09g00929 1168 MobiDBLite consensus disorder prediction 616 632 - -
Eupl09g00929 1168 Pfam BRCT domain, a BRCA1 C-terminus domain 656 737 IPR001357 -
Eupl09g00929 1168 FunFam DNA ligase 667 781 - -
Eupl09g00929 1168 CDD BRCT_DNA_ligase_IV_rpt1 656 742 - -
Eupl09g00929 1168 Pfam ATP dependent DNA ligase domain 228 443 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Eupl09g00929 1168 NCBIfam ATP-dependent DNA ligase 63 598 IPR000977 GO:0003910|GO:0005524|GO:0071897
Eupl09g00929 1168 SUPERFAMILY BRCT domain 656 741 IPR036420 -
Eupl09g00929 1168 ProSitePatterns ATP-dependent DNA ligase signature 2. 419 443 IPR016059 GO:0003909
Eupl09g00929 1168 FunFam DNA ligase 446 606 - -
Eupl09g00929 1168 CDD Adenylation_DNA_ligase_IV 216 447 IPR044125 GO:0005524
Eupl09g00929 1168 FunFam DNA ligase 2 220 - -
Eupl09g00929 1168 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 252 260 IPR016059 GO:0003909
Eupl09g00929 1168 MobiDBLite consensus disorder prediction 935 951 - -
Eupl09g00929 1168 FunFam DNA ligase 222 445 - -
Eupl09g00929 1168 ProSiteProfiles BRCT domain profile. 652 740 IPR001357 -
Eupl09g00929 1168 MobiDBLite consensus disorder prediction 607 632 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl09g00929 216 606 Core DNA Replication Machinery Family AT1G08130 27.873 6.65e-29 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl09g00929 K10777 - nnu:104609073 1732.61