Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl09g00918 ATGTTGATACAGAGTTCTCTTCCTAGTTCAATTGAAGCAGCTCTTTCTTTTGTATCTGACCACGGGAAACAAGACTTATTATGTGATTGGATACCCAGTGATGAAAGTCCAAAATGTGATGAACGTCCTTGGGATGGCTGCAGAGAATCTGTTTCATTTGGGGAGGAAAAAGAGAATGCTGCTGATTACTGCTCTTTAATTCATTCAAGGTCTTATTCCCAATTATCAACTGTTGGCATTATGTGTGCAAGTTCTGCACCAAATCTTGTGTACAAGCGAAGGAAACTGCAAAGGAACTCTGTTGCTCTTTTGTCAGCGCAGGCAGCAACAAACAGTAGGAAGGGAAGTGGTGATTGTCTTTCCAATATAAGTTCTGGCGTGCCTCCACTGGCGGCCAAAAAGGATGATCATCTTGGTTCACAAATCAAGAATGAAATTCATTGTGTCAGAACTCCTGTTATGACTTCAGGTGTATGCAACAGAGATCTTCTTGGTAGTGGAGATACATACATTTGTGGACAGCTTTATCCACAGAAGCTTGATGATGTTCCTTTAACACACATTAACAACACTAGGGGTTTGGAGGTTTCAAAGTCAGAATCTATTAATGGATGTACAGGTGGAGAAGAGCAAGGGTTTGATGAAGCACCAACTAATAGGATCCATAGATCAGCTTTGGAGTACTACAGTGTAAATGATAGCTGTTCATCTTCAAAGTCTAATATGGAACTTGGTTCAACTTCCTTGAAGACTGACATGGATGACAATGGGGAGTGTTCCTCTTCTGATATTTTAACCAAGGAACTGTTGGAGGGAAGTACCTCAGAAAAAGAACTTTGTATCTCTATACTCAGAAGTCATGGGCTGCTTGAAGGAGTTTGTCCTGTCAGAAGTTGTGCTTCTATTGAGGTCCTGGGTATTAATGGTGATAGCAATCATTCGCAATCATGCAAAATATGTGGTCATTCTGGAAATTCACTGAATATGCTAATTTGTGATAATTGTGAAGAGGCATTTCATGTATCTTGCTGCAACCCCAGGATAAAGAAGATACCAGTTGATGAGTGGTATTGTCATCCTTGTTTGAAAAAGAAGCGTAAACTTTCGCTTGAGACTACCACCGGAAAATCATTGAATGTCAAGAGTGAAATGTCTGAATGTAGAAGTAGAGCATCTAAAGGCGGATTAGGTTCTATATTGTTCATGTTGAAAGACACTGAACCCTATACATCTGGTGTTCGAATCGGTAAAGCCTTCCAAGCAGAAGTTCCTGACTGGTCTGGTCCAATTTCCAATGATTTCGATTTTATTGGTGAACCATTGGAAATGGATCCTGCAGAGTGTGTTTGTTTGCATGGGTGGAATACCAACAAATCATCCACACCCAACACTATAGGTAATTGGCTTCAATGTCGAGAGGTAATAGATGACAATGCAGGAGAAAGTGCGGAGGGAGCTATTTGTGGAAAGTGGCGCAGGGCTCCTCTTTTTGAAGTTCAAACTGATGATTGGGATTGCTCCTGCTCTGTTATCTGGGATCCAATCCATTCTGACTGTGCTGTTCCTCAGGAGCTGGGAACGGATCAAGTTCTAATGCATCTAAAATATATAGAACTGCTAAGGCCTCGGCTAGCTGCTAAAAAGCGAAAATTGAGTCGTTCCAAGAGTGATACAGAGGACATGAGAAGTGCAATATTAAAAAATGGGCGTGACTCCTGA 1719 0.4124 MLIQSSLPSSIEAALSFVSDHGKQDLLCDWIPSDESPKCDERPWDGCRESVSFGEEKENAADYCSLIHSRSYSQLSTVGIMCASSAPNLVYKRRKLQRNSVALLSAQAATNSRKGSGDCLSNISSGVPPLAAKKDDHLGSQIKNEIHCVRTPVMTSGVCNRDLLGSGDTYICGQLYPQKLDDVPLTHINNTRGLEVSKSESINGCTGGEEQGFDEAPTNRIHRSALEYYSVNDSCSSSKSNMELGSTSLKTDMDDNGECSSSDILTKELLEGSTSEKELCISILRSHGLLEGVCPVRSCASIEVLGINGDSNHSQSCKICGHSGNSLNMLICDNCEEAFHVSCCNPRIKKIPVDEWYCHPCLKKKRKLSLETTTGKSLNVKSEMSECRSRASKGGLGSILFMLKDTEPYTSGVRIGKAFQAEVPDWSGPISNDFDFIGEPLEMDPAECVCLHGWNTNKSSTPNTIGNWLQCREVIDDNAGESAEGAICGKWRRAPLFEVQTDDWDCSCSVIWDPIHSDCAVPQELGTDQVLMHLKYIELLRPRLAAKKRKLSRSKSDTEDMRSAILKNGRDS* 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl09g00918 572 Gene3D - 466 535 - -
Eupl09g00918 572 SUPERFAMILY FYVE/PHD zinc finger 307 367 IPR011011 -
Eupl09g00918 572 FunFam uncharacterized protein LOC106759733 isoform X4 466 536 - -
Eupl09g00918 572 ProSiteProfiles Zinc finger CW-type profile. 462 527 IPR011124 GO:0008270
Eupl09g00918 572 Pfam ELM2 domain 413 536 IPR000949 -
Eupl09g00918 572 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 304 368 IPR013083 -
Eupl09g00918 572 ProSiteProfiles Zinc finger PHD-type profile. 314 364 IPR019787 -
Eupl09g00918 572 MobiDBLite consensus disorder prediction 550 572 - -
Eupl09g00918 572 PANTHER BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN PROTEIN 1A 311 385 IPR047171 GO:0006338
Eupl09g00918 572 SMART PHD_3 316 362 IPR001965 -
Eupl09g00918 572 ProSitePatterns Zinc finger PHD-type signature. 317 361 IPR019786 -
Eupl09g00918 572 Pfam PHD-finger 317 363 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl09g00918 Eupl-Chr9 18976912 19003291 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl09g00918 317 366 C2H2 Transcription Factor Family AT3G01460 40.000 7.50e-08 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Eupl09g00918 ELM2 1.5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl09g00918 - - nnu:104609049 657.136