Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl09g00911 ATGCAGTTGGTGTCAAATGATAGTCAAACAGAAGACATTTCAGAAACAGAGCCCATTCTATATCAGCCCAACATTGTGTGCAGATCCAAGGAATCTTTATCTTCACGTGAAATTGGATCTGTGGGTGGTGATTGCTCTGTGGATTTTGATGATCTGGAAAGTCTCGATGCTGATGAACATTGCAATTTAGTGAATGCAGACCAACCACAATGTCGGATTTGCCTTGATAATGGAGGTGAAGATCTGATAGCTCCCTGCCATTGCAGAGGCACACAGAAGTATGTGCATCGGTCATGTCTTGATCATTGGAGATCAACTAAGGAGGGCTTTGCTTTTGCCCACTGTACAGAGTGCAAGGCGGTATTCATATTACGCGCAAATGTGCCACCAGATCGGTGGTGGTTGAGATTGAAGTTTCAGCTCCTTGTTGTTAGGGACCATGCATTCATTTTCATTGTTGTTCAGTTGATTGTGGCATTCTTGGGCATGCTGGTATACAAATTTTATGGAGAGGAATTAAGGGAAATGTTTGGTTATGAAGAACACCCATATGGATTTTATACAATGGCAGTTTTAGCTATTGTTTTGGTGGGATTGCTCTACGGGTTCTTTATAGCCATAATCTGTGGGCAGAGGATCAATGAACGTCACTACCATGTTCTTGCTAAACAAGAACTAACAAAGGTTCGGTACCTCTCTACTTTAAGTTTACAAATAACTTTAGAAACCTTCCTACTCAAAGAAGAAAAAAAGCAGAAGACGGAACTATCCCGAAAATTGAATTGTAAATGTTCAATTAAATTATCTAATCATAAAGCATTAGTGAAAATGGTGGAAGCTTCCCTACAAAGAAACTGA 858 0.4009 MQLVSNDSQTEDISETEPILYQPNIVCRSKESLSSREIGSVGGDCSVDFDDLESLDADEHCNLVNADQPQCRICLDNGGEDLIAPCHCRGTQKYVHRSCLDHWRSTKEGFAFAHCTECKAVFILRANVPPDRWWLRLKFQLLVVRDHAFIFIVVQLIVAFLGMLVYKFYGEELREMFGYEEHPYGFYTMAVLAIVLVGLLYGFFIAIICGQRINERHYHVLAKQELTKVRYLSTLSLQITLETFLLKEEKKQKTELSRKLNCKCSIKLSNHKALVKMVEASLQRN* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl09g00911 285 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 191 232 - -
Eupl09g00911 285 SUPERFAMILY RING/U-box 66 122 - -
Eupl09g00911 285 Pfam RING-variant domain 71 118 IPR011016 GO:0008270
Eupl09g00911 285 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 123 IPR013083 -
Eupl09g00911 285 CDD RING_CH-C4HC3_MARCH 71 119 - -
Eupl09g00911 285 ProSiteProfiles Zinc finger RING-CH-type profile. 63 125 IPR011016 GO:0008270
Eupl09g00911 285 SMART ringv_2 70 119 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl09g00911 Eupl-Chr9 18899750 18919751 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl09g00911 1 217 C3H Transcription Factor Family AT1G50440 61.991 3.64e-89 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl09g00911 - - ming:122085505 414.846