Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl09g00838 ATGCAGCAGAGGTTGAAGCAGCAGCAGCAGCAGCAGCAGCAAGCTCTAATGCAGCAGGCGTTGCTTCAGCAGCAGCAGCAGCAGCTTTACCATCCCGGCGTACTCGCTGCTGCGATGTCTCAGATGGAGCCGGTTCCAAGTGGAAATCTGCCTCCTGGGTTTGATTCAACTTCATGCCGCAGTGTGTACGTAGGCAATATCCATGTCAATGTCACCGAGAGCCTTCTTGCAGAGGTTTTCCAGAGTACTGGTCCACTTGAAGGTTGCAAGCTTATCAGAAAAGAGAAGTCATCTTTCGGCTTTGTGGACTACCATGATCGGAGGTCTGCTGCCCTTGCCATAATGACACTGCACGGACGGCAGCTTTATGGACAGGCAATTAAGGTAAACTGGGCATATGCCAGTGGCCAGAGGGAGGATACTTCAGGGCACTTCAATATTTTTGTTGGTGATCTGAGTCCTGAGGTTACTGATGCAACTTTATTTGCATGCTTTTCGGTCTATCCCAGCTGTTCGGACGCAAGGGTCATGTGGGATCATAAAACTGGACGCTCAAGAGGATTTGGCTTTGTTTCTTTTCGTAGTCAGCAGGATGCTCAGAGTGCCATAAATGACTTGACTGGTAAATGGCTTGGAAATAGGCAAATAAGATGCAACTGGGCAGCTAAAGGAGCTGCCTTTAACGAAGACAAGCAGAACAGTGATAACCAAAACATGGTTGTACTTACAAATGGATCTTCAGATGGAGGTCAGGAGAATACAAATGAGGAGGCCCCAGAAAACAACCCATCATATACTACTGTTTATGTTGGCAACCTTGCTCATGAGGTAACTCAAGCTGAACTCCATCGCCAGTTCCATATCCTAGGGGCTGGTATCATCGAGGAAGTGCGGATCCAAAGAGATAAAGGGTTTGGATTTGTCAGGTACCACACCCACGAAGAAGCAGCCTTGGCCATTCAGATGGCCAATGGGAGGATAGTGTGTGGAAAATCCATGAAGTGCTCATGGGGTAACAAGCCCACTCCTCCAGGGACTACTTCAAACCCATTACCTCCACCCGTGCCTCCTTTCCAGATCCTTCCAACTCCTGGGATGAACCAGGGCTATTCGGCAGCAGAGTTGTTGGCTTATCAGCGCCAACTTGCCTTAAGCCAGGCAGCTGGATCTGGGCTATCAGGCCAGGCTCTTGTGCAAATGGCTGGACAGCAGAGTCTTGCCGCAGCCGCTGCTGCCCAGGTTTCTGTTGGTTCCTCTGGTGGATCCCAGGCCATGTATGATGGGTATCCAAACAACTCGTCCGGTCAGCAGCTCATGTACTACTAG 1326 0.5 MQQRLKQQQQQQQQALMQQALLQQQQQQLYHPGVLAAAMSQMEPVPSGNLPPGFDSTSCRSVYVGNIHVNVTESLLAEVFQSTGPLEGCKLIRKEKSSFGFVDYHDRRSAALAIMTLHGRQLYGQAIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDHKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGNRQIRCNWAAKGAAFNEDKQNSDNQNMVVLTNGSSDGGQENTNEEAPENNPSYTTVYVGNLAHEVTQAELHRQFHILGAGIIEEVRIQRDKGFGFVRYHTHEEAALAIQMANGRIVCGKSMKCSWGNKPTPPGTTSNPLPPPVPPFQILPTPGMNQGYSAAELLAYQRQLALSQAAGSGLSGQALVQMAGQQSLAAAAAAQVSVGSSGGSQAMYDGYPNNSSGQQLMYY* 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl09g00838 441 SMART rrm1_1 61 130 IPR000504 GO:0003723
Eupl09g00838 441 SMART rrm1_1 146 219 IPR000504 GO:0003723
Eupl09g00838 441 SMART rrm1_1 267 336 IPR000504 GO:0003723
Eupl09g00838 441 MobiDBLite consensus disorder prediction 242 263 - -
Eupl09g00838 441 Coils Coil 5 25 - -
Eupl09g00838 441 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 266 340 IPR000504 GO:0003723
Eupl09g00838 441 FunFam Oligouridylate-binding protein 1C 243 344 - -
Eupl09g00838 441 Gene3D - 244 344 IPR012677 -
Eupl09g00838 441 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 145 223 IPR000504 GO:0003723
Eupl09g00838 441 SUPERFAMILY RNA-binding domain, RBD 44 138 IPR035979 GO:0003676
Eupl09g00838 441 Gene3D - 1 143 IPR012677 -
Eupl09g00838 441 SUPERFAMILY RNA-binding domain, RBD 252 344 IPR035979 GO:0003676
Eupl09g00838 441 FunFam Nucleolysin TIAR-like protein 1 143 - -
Eupl09g00838 441 FunFam oligouridylate-binding protein 1-like isoform X2 144 238 - -
Eupl09g00838 441 SUPERFAMILY RNA-binding domain, RBD 139 249 IPR035979 GO:0003676
Eupl09g00838 441 Gene3D - 144 223 IPR012677 -
Eupl09g00838 441 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 147 217 IPR000504 GO:0003723
Eupl09g00838 441 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 62 128 IPR000504 GO:0003723
Eupl09g00838 441 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 268 333 IPR000504 GO:0003723
Eupl09g00838 441 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 41 343 - -
Eupl09g00838 441 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 60 134 IPR000504 GO:0003723
Eupl09g00838 441 CDD RRM2_PUB1 144 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl09g00838 Eupl-Chr9 17881717 17890392 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl09g00838 61 334 Eukaryotic Initiation Factors Gene Family AT3G16380 26.804 5.66e-20 90.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl09g00838 K13201 - nnu:104593859 736.487