Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl09g00810 ATGAGGTCTTTTTCTGTGATGGAGTGGAACGCAAAGACTCCCTCACAGTGGGACTGGGAGAACTTGGTGATGTTCAGTGGAAAAGCAAGTGAGATTCCCAAGCAGGTACAACCAACAGACTGGGGAATCGAAGGAGATGGAGGAATTGACAATGGGTCTTTCTATTCATCCGGAGGTGGTGGTTGTTCTGGCTCTGATTTGGGAAATGGCTCTTCGTCCAAGAGCTCTATCTCGGCCTCCGTAGATTCTTCATCAAAGGGAGGAATTAAAATATCTAAGTTTAACTTTGAGACAGTTGAAGGTTTTCCTAAAGATCTTAGCAAGAAAAATGAAATGGGCAGGGTGGAAGATACAGGAACGTCTCCAACATTGGGGGCTTCGGTAGGCTCTGGTGAACCACTGATTGGTTTAAAGCTTGGTAAGCGAACTTACTTTGAAAATGTTTGTGCTGGGAGCACAACTAAGCCCTCGTCTCTTTCTGTGATTCCTACGGCATCGGCTACTACAGCAAAGAGATCCAGAGCATCTTATCAGAGCACGCAGACCCCACGCTGCCAAGTTGAAAATTGCAACCTTGACCTCACCTCAGCTAAAGATTATCATCGCAGGCATAGAGTCTGTGAAAACCATTCCAAATGCCCAAAGGTCATCATAGCCGGTCTGGAACGTAGGTTTTGCCAACAGTGTAGCAGGTTCCATGATTTGTCGGAGTTTGATGAGAAAAAACGAAGCTGTCGTAGGCGTCTGTCTGATCACAATGCACGTCGCCGCAAGCCACAGCCAGAGACAATCCAGTTCAATTCCCCAAGGCTGTCTTCATCATTTTTTGACAGGAGGCAACCGATGAGTCTTATGTTGGACAGGGTCCCATTTGTTCATTCAAGGCCTGCTGCAAATCTAATGTGGGAAAACACATGCGGATTTAATCTCACACAAGCAAAAGGGTCTTTGATGAGGCCGACAAAAGCAGGAGACATCAATGGCCAGCTGCACGTGCCCAGCAATAATCTGCCAAATGTCATTTCTACACTTCGTCATGACTCTAATAGGCTCTTGTCATTCAAGGGCACCACTGCAGAGGTCCTCAATCAAGGTCTAGAAGCTTCTACAATCGCTTCTAACTTGGATGCAACACCAGATCTTCGGCGTGCTCTCTCTCTTCTGTCAACCAATTCTTGGGCTTCAGGCGATCATGAACCTGCTTCTCTTGACCAACTCATGCATGTGAACCACACCAGCATGGCACAGCCTGTGATGCATGCGGTCCCCCAAGGCTTGCCACTTGCTTCATCAGAGTACTGGCAGGCAGAACAGCAACCGACTCAGACTCGGGTGCATTCATTGGCCTTGCACAATAATGGCAACAACCAGTTCCAAGAGTTTCAGCTGTTCAAAGCACCATATGAATCTGGGTTTTACTCCAATCAGTTGAACTGA 1437 0.4725 MRSFSVMEWNAKTPSQWDWENLVMFSGKASEIPKQVQPTDWGIEGDGGIDNGSFYSSGGGGCSGSDLGNGSSSKSSISASVDSSSKGGIKISKFNFETVEGFPKDLSKKNEMGRVEDTGTSPTLGASVGSGEPLIGLKLGKRTYFENVCAGSTTKPSSLSVIPTASATTAKRSRASYQSTQTPRCQVENCNLDLTSAKDYHRRHRVCENHSKCPKVIIAGLERRFCQQCSRFHDLSEFDEKKRSCRRRLSDHNARRRKPQPETIQFNSPRLSSSFFDRRQPMSLMLDRVPFVHSRPAANLMWENTCGFNLTQAKGSLMRPTKAGDINGQLHVPSNNLPNVISTLRHDSNRLLSFKGTTAEVLNQGLEASTIASNLDATPDLRRALSLLSTNSWASGDHEPASLDQLMHVNHTSMAQPVMHAVPQGLPLASSEYWQAEQQPTQTRVHSLALHNNGNNQFQEFQLFKAPYESGFYSNQLN* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl09g00810 478 Gene3D - 175 246 IPR036893 GO:0003677|GO:0005634
Eupl09g00810 478 Pfam SBP domain 185 258 IPR004333 GO:0003677
Eupl09g00810 478 SUPERFAMILY SBT domain 183 265 IPR036893 GO:0003677|GO:0005634
Eupl09g00810 478 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 65 443 IPR044817 GO:0003677
Eupl09g00810 478 FunFam Squamosa promoter-binding-like protein 14 176 246 - -
Eupl09g00810 478 ProSiteProfiles Zinc finger SBP-type profile. 182 259 IPR004333 GO:0003677
Eupl09g00810 478 MobiDBLite consensus disorder prediction 243 262 - -
Eupl09g00810 478 MobiDBLite consensus disorder prediction 66 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl09g00810 Eupl-Chr9 17404271 17410125 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl09g00810 7 460 SBP-box Gene Family AT5G43270 40.685 4.15e-89 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Eupl09g00810 SBP 1e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl09g00810 - - nnu:104593839 689.493