Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl09g00808 ATGGGAACTCTAGTAAACGAAATCCTAGAAGAGGAAGAACAACATGTGTTCCGAAGCCAGTTTCCGGCGGTGCCGGTGCCCGATGACATGACATTGCCGGAGTTCGTCCTCCATGATGCCGAGCTTTACGCAGACAAGGTAGCATTAGTGGAAGCTGTAACTGGGAAAAGCTACACATATGGTCAGGTGATACGGGATACTCGGAGGTTCTCTAAGGCGTTGAGGTCTCTTGGTCTTAGGAAGGGACGGGTTGTGGTGGTTGTACTCCCTAATGTGGCGGAGTACTCCATTATCGCGCTGGGGATAATGGCGTCTGGGGGTGTGTTCTCGGGTGCAAACCCGTTGGCTCATGCATCCGAGATAAAGAAGCAGGTGGAGGATGCAGATGCTAAGCTGATCGTTACGTGTGGATCCATCTACGAGAAGGTGAAAGATTTGGAGGTGCCGGTAATAATAGTGGGTGAAGATCGCATAGAGAGCACCATCTCCTGGGATGATTTGCTGGAGGCAGCAGATCGTGCTGGCACTGATACTACCGTCGATGAAAAAGTTCACCAGACTGATCTTTGCGCCCTTCCATTCTCATCTGGGACCACAGGGACATCAAAGGGTGTAATGCTGACCCATAGGAACCTAGTAGCCAACCTCTGCTCCACACTCTTCAGTGTTAACCCTGATATGGTGGGCCATGTCACAACACTTGGTCTAATGCCATTTTTCCATATATATGGGATCGCGGGAATATGTTGCGCCACACTTAGGAACAAAGGGAAGGTGGTGGTGATGGGAAGGTTCGAACTCCGAACGTTTCTTAATACGTTGATCACGCATGAGGTGAATTTCGCACCGATCGTGCCGCCGATCATGTTGGCCTTGGTTAAGAATCCGGTGGTGGAGGAATTCGATCTCAAGCAACTCAAGCTTCGGGCCGTGATGACAGCTGCAGCTCCTCTTGCACCAGAGCTACTATCAGCCTTCGAGAACAAGTTCCCCGGTGTTCAAGTCCAAGAGGCATATGGACTGACTGAGCACAGCTGCATTACACTTACCCATGGGGACCCCAGCAAAGGGCATGGCGTAGCAAAGAAAAACTCAGTGGGCTTCATCCTCCCCAATTTGGAGATCAAATTCATCGATCCCGAGACCGGACGATCCCTTCCTAAGAACACCCCTGGTGAAGTCTGTGTCAGAAGCCAATGTGTAATGCAAGGTTACTATAACAACAAGGAGGAGACCGACCGGACCATCGATGCAAAAGGGTGGCTCCACACCGGTGACATCGGCTACATAGACGACGATGGTGATGTCTTCATCGTCGATCGCATTAAAGAGTTGATCAAGTACAAAGGTTTCCAGGTAGCTCCTGCTGAGTTAGAGGCCATCCTTCTTTCTCATCCTTCAGTTGAAGATGCTGCTGTCGTCTCATTGCCTGATGAAGAAGCAGGAGAAATCCCAGCTGCTTGTGTTGTGATGAACCCAAATGCAAAGGAGAGTGAAGAGGATGTGATGAACTTTGTTGCTTCCAATGTAGCCTCTTACAAGAAGGTGAGAGTGTTGCATTTTGTGGACACAATCCCCAAATCACCTTCAGGGAAGATTATGAGAAGGTTTCTTAGGGAGAAGATGGAGAAAAGGATGTAG 1641 0.496 MGTLVNEILEEEEQHVFRSQFPAVPVPDDMTLPEFVLHDAELYADKVALVEAVTGKSYTYGQVIRDTRRFSKALRSLGLRKGRVVVVVLPNVAEYSIIALGIMASGGVFSGANPLAHASEIKKQVEDADAKLIVTCGSIYEKVKDLEVPVIIVGEDRIESTISWDDLLEAADRAGTDTTVDEKVHQTDLCALPFSSGTTGTSKGVMLTHRNLVANLCSTLFSVNPDMVGHVTTLGLMPFFHIYGIAGICCATLRNKGKVVVMGRFELRTFLNTLITHEVNFAPIVPPIMLALVKNPVVEEFDLKQLKLRAVMTAAAPLAPELLSAFENKFPGVQVQEAYGLTEHSCITLTHGDPSKGHGVAKKNSVGFILPNLEIKFIDPETGRSLPKNTPGEVCVRSQCVMQGYYNNKEETDRTIDAKGWLHTGDIGYIDDDGDVFIVDRIKELIKYKGFQVAPAELEAILLSHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEEDVMNFVASNVASYKKVRVLHFVDTIPKSPSGKIMRRFLREKMEKRM* 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl09g00808 546 CDD 4CL 26 538 - -
Eupl09g00808 546 ProSitePatterns Putative AMP-binding domain signature. 192 203 IPR020845 -
Eupl09g00808 546 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 12 541 - -
Eupl09g00808 546 Gene3D - 14 443 IPR042099 -
Eupl09g00808 546 Gene3D - 444 546 IPR045851 -
Eupl09g00808 546 FunFam 4-coumarate--CoA ligase 2 444 545 - -
Eupl09g00808 546 Pfam AMP-binding enzyme 39 448 IPR000873 -
Eupl09g00808 546 Pfam AMP-binding enzyme C-terminal domain 457 532 IPR025110 -
Eupl09g00808 546 SUPERFAMILY Acetyl-CoA synthetase-like 13 544 - -
Eupl09g00808 546 FunFam Long-chain-fatty-acid--CoA ligase FadD 18 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl09g00808 Eupl-Chr9 17383085 17390481 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl09g00808 10 542 Monolignol Biosynthesis Gene Families AT1G62940 74.672 0.0 821
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl09g00808 K01904 - nnu:104612676 875.544