Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl09g00744 ATGGGTCTCTCGACTCTCTCCTCCTCCGCGTCTGATGATGACCACTCATCCCAAGCTGAACATCACACCCAGGTGGGTCAGCCTTCTTCTTGCTCCTCCGGATCCTCAATATCGGCGCAGATGATCCGAGAAAGTCTAAACGTGTCCATGTATGGAGATATCGCCGGAAGGCTGCCGGAAAGCTGTAATACATGCGCCGTTTGCTTGAACGAGTTGAGAAAGCGAGACAAGGTGAGGGAACTGCGGAACTGCTGCCACGTATTCCACAAGAGATGCATCGACAGATGGCTTGACCACGACGATCAAAAGACTTGTCCCCTCTGCAGGGCCCCCTTATTGGCCTTCTCGACCTTGGGGTTGACGAGATTGAACAATACGAAACATATATTCAGAGGCTCCAGGCATATATCTAAGGTTGAAATTAAGGCATTGCCATTTAATTATGTGGCTTTGTTTAAGGAGAAAGAGAAGCCCTTCCCTCTCTCGTTGTGGATCGCCATCGCCTGCCAGCAGCAATTGCCTAACCCTAACGAAAGAGTGCATGCGATTGAGCTAGAGTTTGAGGTGAAGAGAGAACGAGAGATAGGCACTTGCTGTTGGCATGCGATGGCGATCCATGGAACCCTCTCCCTTGACGCCGTCGACCTATTCCCTCTTTTCTCATGTTGGCGACGCATAAGCGTAGGAGGCCTTTTCCCTCTTCCATCTGTCTCTGTGGCGTCGCTCAAAGCATAG 735 0.5102 MGLSTLSSSASDDDHSSQAEHHTQVGQPSSCSSGSSISAQMIRESLNVSMYGDIAGRLPESCNTCAVCLNELRKRDKVRELRNCCHVFHKRCIDRWLDHDDQKTCPLCRAPLLAFSTLGLTRLNNTKHIFRGSRHISKVEIKALPFNYVALFKEKEKPFPLSLWIAIACQQQLPNPNERVHAIELEFEVKREREIGTCCWHAMAIHGTLSLDAVDLFPLFSCWRRISVGGLFPLPSVSVASLKA* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl09g00744 244 ProSiteProfiles Zinc finger RING-type profile. 65 109 IPR001841 -
Eupl09g00744 244 SMART ring_2 65 108 IPR001841 -
Eupl09g00744 244 MobiDBLite consensus disorder prediction 21 35 - -
Eupl09g00744 244 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 44 114 IPR013083 -
Eupl09g00744 244 PANTHER RING ZINC FINGER PROTEIN-RELATED 27 151 - -
Eupl09g00744 244 SUPERFAMILY RING/U-box 64 114 - -
Eupl09g00744 244 MobiDBLite consensus disorder prediction 1 35 - -
Eupl09g00744 244 Pfam Ring finger domain 63 109 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl09g00744 Eupl-Chr9 16485153 16490179 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl09g00744 36 117 C3H Transcription Factor Family AT5G20885 53.125 5.50e-26 98.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl09g00744 K16281 - msin:131251839 135.576