Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl09g00690 ATGATGTTTCATGCTCAAGGTCCTTCGAAACATACCTGTGGCCTTCTCGCAGTTGTGTGTGGGAAAAATTCTGATTATAAACAAAAGCAGGAGATTTCAGAGGATGGGCCTAGATACCCCTTTCCGGAGCTTGTTTCTTCTGGCCGTCTAGAGGTTCAGACCCTGAACAATCCAGCAACGGATGAGTTCCGACGAGTTTTAGAATCATGGGAGCCAAGTATTGTGTACTTGCAAGGAGAGCAGCTTCCAAATGATGAAGAAATAGGCTCCCTTGTGTGGGGAGGTGTTGATTTGTCCACTGTTGAAGCAATTTGCGGGCTTTTTGATTCCACATTACCAACCACTGTTTATTTGGAAATAGCTAATGGTGAAAAGTTGGCAGAGGCGCTTCACTCAAAGGGAATTCCTTATGTGATATTTTGGAAGAATGCATTCTCTTGTTATGCAGCTTGCCATTTTCGCCAGGCATTGTTGTCAGTGGTACAGAGTTCATGTAGCCATACATGGGATGCTTTCCAACTTGCGCATGCATCCTTTAGGCTCTACTGTGTACGAAACAACCACGTCTTGCCAGCTAACAGTCACAAAGTTAGTGGAAAGCTGGGGCCCCGCCTTCTCGGGGACCCTCCAAAGATCAACATCGCTCCACTGGAGAATGAGGCAGGGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGACGAAGACTTGCCTGGTACTCTTCCTGCTATAAAAATTTACGATGATGATGTGAGCATGAGGTTTCTTGTTTGTGGAGTGCCATGCACTTTGGATGCATGCATATTGGGATCTCTGGAAGATGGCCTCAATGCCCTCTTGAGCATCGAAATACGTGGCAGTAAACTTCATAATCGGGTCAGTGCCCCACCGCCTCCTCTTCAGGCAGGGACATTTTCTCGTGGGGTCGTAACCATGCGATGTGATCTGTCAACCTGTAGTTCTGCCCATATCTCACTTCTAGTGTCCGGTAGTGCACAAACTTGTTTCAATGATCAGCTCCTGGAGACACATATAAAAAACGAACTTATTGAGAAGAGTCAGCTAGTCCATGCGTTGCCAAGCTGTGAGGAAAGCAAACCATCTTTATCTGAGCCTCGGAAGTCTGCCTCAATAGCTTGTGGGGCAACTGTATTTGAAGTTTGCATGAAGGTTCCAACATGGGCTTCACAGGTTTTGAGGCAGCTTGCACCAGAAGTTTCTTATCGTAGCTTTGTTACCCTTGGCATTGCCAGTATTCAGGGATCATCTGTTGCTTCTTTTGAGAAAGATGATGCTGAGCGCCTTCTTTTCTTCTGTACAAAGCAGGGGAAGGATCTCCTTCCAAAGAATGCTATTCCTGGTAGTCCCCCAAGCTGGTTAAAACCACCTGCTCCTAACCGGAAGAGGTCTGAACCATGTCGTGAAACAAGACCTGTCACTCACAGTGTTGTTTTAGGTGAAAGCGGAGCAGGTTTTCCAAAAGAAGACGACGAAAATAAGCAACCGGGATTGATTGATGGGGTCAGCATGCCCTTAGTACCCGTAAGACAGAAACTGAAAGTTGCTGCGATGAGGCCCATCCCTCACACCCGTCACCACAAGATGCTGCCCTTTTCAGGGATTCCTGAGGCTGATGGATATGATGGAGCCCAGGCAAAGGCTAACTTATCAGTTGTCCCCTCTGCAAAGCATAATATTGTGGGGCCGGCTCCTGTCACGCATCGGAAATCATTGTCAAGCTCTTTTCAGGCTCAGCAGATTATTTCTTTGAATCCCCTACCCTTGAAGAAACATGGTTGCGGCCGATCTCCGATTCAAGTTTGCTCAGAGGAGGAGTTTCTGAGGGATGTGATGCAGTTTCTCATCGTTCGGGGACATACCCGGCTTGTCCCTCAAGGCGGGCTTGCTGAGTTCCCAGAGGCCATACTCAATGCAAAGCGTTTGGACCTCTACAACTTGTATAGAGAGGTGGTTTCAAGAGGAGGCTTTCATGTTGGAAATGGCATCAACTGGAAAGGCCAGGTTTTCTCGAAGATGCGCAATCACACAATGACCAACAGAATGACTGGTGTTGGGAATACACTCAAAAGACATTACGAAACATATCTTTTGGAATATGAATTGGCCCATGATGATGTAGATGGAGAGTGTTGTTTGTTGTGTCACAGTAGCGCAGCTGGTGATTGGGTGAACTGTGGCATATGTGGTGAGTGGGCGCATTTTGGCTGCGACAGACGGCAGGGACTTGGTGCTTTCAAGGACTATGCCAAAACGGATGGGCTGGAGTACATTTGCCCCCACTGCAGCATAACCAATTTCAGGAGGAAACCGCAGAAAAGTGCAAATGGGTATTAG 2355 0.4718 MMFHAQGPSKHTCGLLAVVCGKNSDYKQKQEISEDGPRYPFPELVSSGRLEVQTLNNPATDEFRRVLESWEPSIVYLQGEQLPNDEEIGSLVWGGVDLSTVEAICGLFDSTLPTTVYLEIANGEKLAEALHSKGIPYVIFWKNAFSCYAACHFRQALLSVVQSSCSHTWDAFQLAHASFRLYCVRNNHVLPANSHKVSGKLGPRLLGDPPKINIAPLENEAGEEEEEEEEEEEDEDLPGTLPAIKIYDDDVSMRFLVCGVPCTLDACILGSLEDGLNALLSIEIRGSKLHNRVSAPPPPLQAGTFSRGVVTMRCDLSTCSSAHISLLVSGSAQTCFNDQLLETHIKNELIEKSQLVHALPSCEESKPSLSEPRKSASIACGATVFEVCMKVPTWASQVLRQLAPEVSYRSFVTLGIASIQGSSVASFEKDDAERLLFFCTKQGKDLLPKNAIPGSPPSWLKPPAPNRKRSEPCRETRPVTHSVVLGESGAGFPKEDDENKQPGLIDGVSMPLVPVRQKLKVAAMRPIPHTRHHKMLPFSGIPEADGYDGAQAKANLSVVPSAKHNIVGPAPVTHRKSLSSSFQAQQIISLNPLPLKKHGCGRSPIQVCSEEEFLRDVMQFLIVRGHTRLVPQGGLAEFPEAILNAKRLDLYNLYREVVSRGGFHVGNGINWKGQVFSKMRNHTMTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYICPHCSITNFRRKPQKSANGY* 785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl09g00690 784 CDD PHD_ARID4_like 717 768 - -
Eupl09g00690 784 CDD ARID 609 707 - -
Eupl09g00690 784 ProSiteProfiles ARID domain profile. 607 711 IPR001606 GO:0003677
Eupl09g00690 784 SMART ARID_2 604 707 - -
Eupl09g00690 784 MobiDBLite consensus disorder prediction 207 239 - -
Eupl09g00690 784 SUPERFAMILY FYVE/PHD zinc finger 707 774 IPR011011 -
Eupl09g00690 784 MobiDBLite consensus disorder prediction 450 506 - -
Eupl09g00690 784 MobiDBLite consensus disorder prediction 219 237 - -
Eupl09g00690 784 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 708 775 IPR013083 -
Eupl09g00690 784 SUPERFAMILY ARID-like 608 722 IPR036431 GO:0003677
Eupl09g00690 784 Gene3D - 604 707 IPR036431 GO:0003677
Eupl09g00690 784 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 4 784 IPR042293 -
Eupl09g00690 784 Pfam ARID/BRIGHT DNA binding domain 610 707 IPR001606 GO:0003677
Eupl09g00690 784 Coils Coil 214 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl09g00690 Eupl-Chr9 15731757 15739466 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl09g00690 2 783 ARID Transcription Factor Family AT3G43240 64.541 0.0 1026
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Eupl09g00690 ARID 3.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl09g00690 - - ming:122064078 1350.11