Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl09g00689 ATGGCGTCTGAGGATTCGTTGAAGAAAAGATTGCAGGATTTGCAAAAACAGCTCGGAAAGAAACACACGTTCGAAGAGGCCGTCTCCTCTATTAAATCTCTGCTCATCGAGACCTATCCCTCTGCATCCCCCTCTCTTCGGAAATCGATCTATTCTGTTGTTTGTCGGGTTGCAACTATTTTACAAACGAGATATACAGCACCCGGATTCTGGCTTGCTGGTAAAGGGCTTTTTGTGGAGGCTGAGCACCTGGTGACCGATTCTTCCGAAAGGGAACATTTGAAGACTTGCATTGCTAGAGCTCGTGAGCATTTGAATGAAACAGAGAATCAGCCGGAGGTTTCAGAAACTGCACAAGTTAGGACAGATACAGGTTCAAGATATCTTTTTGAAGGGCATCTGACTGTGGATCCCGAGCCCGCACGGCCCACATGGCTAGTTGCACAGGAGGTTCTGGATAGTATTGCTGCAGCATCCGAATCTTCTCAAGGCCAGAGGGAGAACGGTATCACATCTGAAAGAGCTTCTGAATTAATGCAAGGGTTCATGAATAGCTTGAACCATACCTTTCACGACCTTGATGATGTCATCGAAGCTTCATTGCAGGTTGTTCCATTCAAATTGGTGCTATTAAGTTCCACTTCAGAATCAGGGAGGTTCTCATATCAATTTTCTGTCTTTAATATACAGGAGATTGGTGCTGGACCCCAGCGACCACCACCGGCCAGTAAAGAAGTGGTCCAGAGGCTTCCAATTATCACTGTTACGGAGGAAATCCTGTCAAGGCTGGGGAGTGAGACAGAGTGTGCTGTTTGCCAGGAGGACTTGGTCATAAATGACAAGATGCAGGAGTTGCCTTGCAAGCACTTGTTTCACCCCCCTTGTCTAAAGCCATGGCTGGACAAGCACAACTCTTGTCCAATTTGCAGATACGAGCTGCCAACAGATGACCATGCCTATGAGAGCCGGAAAGAGAGGGAGAAGGAAGCTGAAGAAGAACGAAAGGGTGCTGCGAATGCTCTACGTGGTGGTGAATACATGACAACTTTTAGCCATATCTATGGTGCCTGA 1071 0.4715 MASEDSLKKRLQDLQKQLGKKHTFEEAVSSIKSLLIETYPSASPSLRKSIYSVVCRVATILQTRYTAPGFWLAGKGLFVEAEHLVTDSSEREHLKTCIARAREHLNETENQPEVSETAQVRTDTGSRYLFEGHLTVDPEPARPTWLVAQEVLDSIAAASESSQGQRENGITSERASELMQGFMNSLNHTFHDLDDVIEASLQVVPFKLVLLSSTSESGRFSYQFSVFNIQEIGAGPQRPPPASKEVVQRLPIITVTEEILSRLGSETECAVCQEDLVINDKMQELPCKHLFHPPCLKPWLDKHNSCPICRYELPTDDHAYESRKEREKEAEEERKGAANALRGGEYMTTFSHIYGA* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl09g00689 356 Coils Coil 91 111 - -
Eupl09g00689 356 ProSiteProfiles Zinc finger RING-type profile. 269 310 IPR001841 -
Eupl09g00689 356 FunFam E3 ubiquitin-protein ligase RNF181 230 316 - -
Eupl09g00689 356 SUPERFAMILY RING/U-box 263 316 - -
Eupl09g00689 356 SMART ring_2 269 309 IPR001841 -
Eupl09g00689 356 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 230 316 IPR013083 -
Eupl09g00689 356 CDD RING-H2_RNF126-like 268 310 - -
Eupl09g00689 356 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 149 314 - -
Eupl09g00689 356 Pfam Ring finger domain 268 310 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl09g00689 Eupl-Chr9 15722898 15728948 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl09g00689 7 347 C3H Transcription Factor Family AT5G20910 54.360 4.95e-115 335
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl09g00689 K16274 - psom:113326030 426.017