Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl09g00686 ATGTGTGGCGGAGCTATAATCTCCGATTTCATCCCGTCGAGTCGGTCTCGTCGACTGACATCTGATTACTTGTGGCCCGATTCGAAGAAAAATGCTGGAAATCATTACTCGAAGCCCCTGCGTCCGGAGATCATTGACGTTGAAGACGATTTCGAGGCCGATTTTCAGGAATTCAAGGACGAGTCCGACGAGGAGGAAGAAGACGTTAAGCCCTTCTCCTTCACCTCCAAATCTGGGTTCTCACGCGAAGGATCTACTACTGTAAAATCTGTGGAATATAATGGGCCTGCTGAGAAATCCGCGAAGAGAAAGAGGAAGAACCAATATAGAGGAATCCGACAGCGCCCATGGGGGAAATGGGCGGCCGAGATCAGAGACCCTAGAAAAGGCGTTCGAGTCTGGCTTGGAACCTTCAACACTGCTGAAGAAGCCGCAAGGGCTTATGACGCTGAGGCCAGGAGGATCCGGGGCAAGAAAGCCAAGGTGAATTTCCCTGAGGAGACTCTCCCCACAGCTCAAAACCGCACCATGAAGCTAAACCCACCGAAAGTGCTTCCCAAAACCAACCAGACCTTGGAGAAGCCAAAATTCAACCAGGATTTTAGTTTCGTGAACAACCCAGATCATGATTTCTATGATCCTATGGGATTTATGGAAGAGAAAGCCTCAATCAATGGATCCGGATACATGAATTGCGCCCCCCAGATCGAGGACCAAATTGGATTCAAATCATTCACCCCTTCTAATGGTGGACCCTTGTGTTTTAGTTCAGACCAAGGGAGCAACTCTTTCAATTGTTCAGACTTTGGATGGGGAGAACCCGAACCAAAGACACCGGAAATCTCATCAGTTCTCTCACCTACTATAGAAGTGGACGATTCAGAATTCGTTGAAGATACTAACCCGAAGAAGAAACTGAGGACCAATTCCGAGAATTCAGTGCCAGTTGAGGAAAACGCAGCGAAGAAACTGTCTGAAGAGCTATCAGCCTTCGAGTCTCAGATGAAATTCCTACAAATACCATATCTTGAGGGAAACTGGGATGCTTCAATGGATAACCTCCTCAGTGGGGACACGACGCAGGATGGCGGTAACTCGATTGATCTCTGGAGCTTCGATGATCTCCCTGCAATGGCTGCCGACGTCTTCTGA 1152 0.4844 MCGGAIISDFIPSSRSRRLTSDYLWPDSKKNAGNHYSKPLRPEIIDVEDDFEADFQEFKDESDEEEEDVKPFSFTSKSGFSREGSTTVKSVEYNGPAEKSAKRKRKNQYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDAEARRIRGKKAKVNFPEETLPTAQNRTMKLNPPKVLPKTNQTLEKPKFNQDFSFVNNPDHDFYDPMGFMEEKASINGSGYMNCAPQIEDQIGFKSFTPSNGGPLCFSSDQGSNSFNCSDFGWGEPEPKTPEISSVLSPTIEVDDSEFVEDTNPKKKLRTNSENSVPVEENAAKKLSEELSAFESQMKFLQIPYLEGNWDASMDNLLSGDTTQDGGNSIDLWSFDDLPAMAADVF* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl09g00686 383 PANTHER DNA-BINDING DOMAIN 73 300 IPR044808 GO:0003700|GO:0009873
Eupl09g00686 383 SUPERFAMILY DNA-binding domain 108 166 IPR016177 GO:0003677
Eupl09g00686 383 CDD AP2 108 166 IPR001471 GO:0003700|GO:0006355
Eupl09g00686 383 Gene3D AP2/ERF domain 107 166 IPR036955 GO:0003700|GO:0006355
Eupl09g00686 383 ProSiteProfiles AP2/ERF domain profile. 108 165 IPR001471 GO:0003700|GO:0006355
Eupl09g00686 383 FunFam Ethylene-responsive transcription factor 2 107 166 - -
Eupl09g00686 383 Pfam AP2 domain 108 157 IPR001471 GO:0003700|GO:0006355
Eupl09g00686 383 PRINTS Ethylene responsive element binding protein signature 131 147 IPR001471 GO:0003700|GO:0006355
Eupl09g00686 383 PRINTS Ethylene responsive element binding protein signature 109 120 IPR001471 GO:0003700|GO:0006355
Eupl09g00686 383 SMART rav1_2 108 171 IPR001471 GO:0003700|GO:0006355
Eupl09g00686 383 MobiDBLite consensus disorder prediction 56 76 - -
Eupl09g00686 383 Coils Coil 48 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl09g00686 Eupl-Chr9 15680805 15683316 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl09g00686 1 383 AP2-EREBP Transcription Factor Family AT1G53910 46.898 7.60e-81 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Eupl09g00686 AP2 2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl09g00686 K09286 - nnu:104600466 531.561