Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl09g00685 ATGGGAGATGTTGGTCTCATAGAGATAGTAGATCTCGAAAATGATCTTCGCTACACCCCCATTTCATGTAGAGGAAGCAGCAAAAAGGAAGCAATCTCAGTCGAGGAATATGCAGAACACAAAGAGCGTAAACTAACAGCCATGGCTTCACTTCTTCAAACCATACGAATCATCGATCTCTCTGAAGAAGAAGAAGAAGCTGAACGAATCATCGATCTCTCGAAAGATGAAGAAGATGAAGTAGTAGAAATAAAGCAGCCCACTACACCATTCAGAAAGAAACCCTTTACGGGTCCTTCAGTAACCGAAACAGGGCAATCTTCAAATTCAGATGCTTCGATGTTGATTCAATCTTCGAATCCGAGTTCTTCGATGTTTATTTGCGAAATCTGCGTAGAACCCAAATCACAGAAGGAGTTTTTCAGCATAAAGGGATGTACACACGGTTTCTGTTCCGAGTGTATGGTCAAGTATGTGGCTTCGAAGATTCAAGAGAACATCACGTCGATCAGATGCCCTGAACCAAATTGCGAAGGGGTTTTAGAACCTGAATTTTGTCATTCAATCCTCCCACCGGAAGTCTTCGATCGATGGGGTAAAGCTCTATGTGAGTCTTTAATTCTTGGATCTGAGAAAATTTACTGCCCATATAAGGACTGTTCAGCGCTTTTAGTTGATGATGGAGAGTTTGTTATAAAGGAGACGGAGTGTCCGGATTGTCGGCGATTGTTTTGTGCGCAATGTAAGGTTCCTTGGCATTCAGGGATTGAGTGCGAGGAGTTTCAGAAATTGAACGAGGATGAGAGAGGAAGAGAAGATATCATGGTGATGGAGCTTGCTAAGAAGAGTAATTGGCAGAGGTGTCGCATGTGCAAGTTCTATGTAGAAAGGTCTCAAGGTTGCTTGTTCATGAAATGCAGGTGTGGGTTTACATTCTGTTACAATTGTGGGAATGCAACTCGAGACCATTACTGCCCTACCTGTAAGCATTAA 993 0.427 MGDVGLIEIVDLENDLRYTPISCRGSSKKEAISVEEYAEHKERKLTAMASLLQTIRIIDLSEEEEEAERIIDLSKDEEDEVVEIKQPTTPFRKKPFTGPSVTETGQSSNSDASMLIQSSNPSSSMFICEICVEPKSQKEFFSIKGCTHGFCSECMVKYVASKIQENITSIRCPEPNCEGVLEPEFCHSILPPEVFDRWGKALCESLILGSEKIYCPYKDCSALLVDDGEFVIKETECPDCRRLFCAQCKVPWHSGIECEEFQKLNEDERGREDIMVMELAKKSNWQRCRMCKFYVERSQGCLFMKCRCGFTFCYNCGNATRDHYCPTCKH* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl09g00685 330 CDD Rcat_RBR_unk 284 317 - -
Eupl09g00685 330 ProSiteProfiles TRIAD supradomain profile. 124 330 IPR044066 -
Eupl09g00685 330 MobiDBLite consensus disorder prediction 88 116 - -
Eupl09g00685 330 Pfam Zinc finger, C3HC4 type (RING finger) 128 173 IPR018957 GO:0046872
Eupl09g00685 330 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 68 327 IPR031127 GO:0004842|GO:0016567
Eupl09g00685 330 ProSiteProfiles Zinc finger RING-type profile. 128 173 IPR001841 -
Eupl09g00685 330 MobiDBLite consensus disorder prediction 93 116 - -
Eupl09g00685 330 FunFam RBR-type E3 ubiquitin transferase 123 209 - -
Eupl09g00685 330 ProSiteProfiles Zinc finger RING-type profile. 288 329 IPR001841 -
Eupl09g00685 330 Coils Coil 57 80 - -
Eupl09g00685 330 SUPERFAMILY RING/U-box 122 205 - -
Eupl09g00685 330 Gene3D - 256 330 - -
Eupl09g00685 330 SUPERFAMILY RING/U-box 203 263 - -
Eupl09g00685 330 SUPERFAMILY RING/U-box 269 329 - -
Eupl09g00685 330 ProSitePatterns Zinc finger RING-type signature. 146 155 IPR017907 -
Eupl09g00685 330 SMART ibrneu5 196 258 IPR002867 GO:0008270
Eupl09g00685 330 CDD BRcat_RBR_unk 209 261 - -
Eupl09g00685 330 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 121 207 IPR013083 -
Eupl09g00685 330 Pfam IBR domain, a half RING-finger domain 207 258 IPR002867 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl09g00685 Eupl-Chr9 15671710 15677146 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl09g00685 128 317 C3H Transcription Factor Family AT2G19610 31.188 3.34e-24 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl09g00685 K11975 - ming:122063115 431.024