Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl09g00679 ATGGCGACCGCGAAAGGGCTGTCTCAGAAAGAAGCTGACATTCAGATGATGTTGGCCGCTGATGTGCATCTTGGTACAAAAAACTGCGATTTTCAAATGGAGAGATACGTGTTTAAAAGACGAACAGACGGTATCTTTATCATAAACCTCGGGAAAACATGGGAGAAGCTTCAGCTAGCCGCAAGGGTTATTGTTGCTATTGAGAACCCTCAGGACATTATTGTTCAATCCGCTAGGCCATATGGTCAGAGAGCTGTATTGAAGTTTGCACAATACACGGGTGCTCACCCAATTGCAGGGAGACACACACCTGGAACATTTACAAATCAGCTCCAGACGTCCTTCAGCGAGCCTCGTCTACTCATCCTCACTGACCCCAGAACTGATCACCAGCCAATCAAGGAAGCTGCACTTGGAAACATTCCAACCATTGCCTTCTGTGATACTGATTCACCGATGAGATATGTTGACATTGGGATCCCTGCCAATAATAAGGGGAAGCACAGTATTGGCTGTCTGTTCTGGTTGTTGGCGAGGATGGTTCTGCAGATGCGTGGGACTATTCTTCCTGGGCATAAATGGGATGTGATGGTGGATTTATTTTTTTACAGGGAACCTGAGGAGGCCAAGGAACAGGAAGAAGACGATGTCATTGCTGGCCCTGATTATGGAGTCACAGATTACACAGCAGCTGCTCTCGGTCTTCCAGGTGATCAATGGATTGCTCCAATTGCTGATGCCCAGTGGGGTTCGGAAATGGCTACTGCTCCAGCCATTCCTGCTGTTTCTGGCATTGATTGGGCTGCAGCTCCAGTTCCTTCATCCGGTGATGGTTGGGGGGATGCAGCACCAGCACCAGCACCGGCACCAGCACCGGCACCGGTACCAGCACCGGTACCAGCACCGACAATAGCTGCACCGGGAATTGATGCTATTCCTCCCCCTGCTACAGGTTGGGAATGA 963 0.4995 MATAKGLSQKEADIQMMLAADVHLGTKNCDFQMERYVFKRRTDGIFIINLGKTWEKLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHPIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFYREPEEAKEQEEDDVIAGPDYGVTDYTAAALGLPGDQWIAPIADAQWGSEMATAPAIPAVSGIDWAAAPVPSSGDGWGDAAPAPAPAPAPAPVPAPVPAPTIAAPGIDAIPPPATGWE* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl09g00679 320 SUPERFAMILY Ribosomal protein S2 9 199 IPR023591 -
Eupl09g00679 320 Pfam Ribosomal protein S2 17 110 IPR001865 GO:0003735|GO:0005840|GO:0006412
Eupl09g00679 320 Pfam Ribosomal protein S2 116 181 IPR001865 GO:0003735|GO:0005840|GO:0006412
Eupl09g00679 320 PANTHER 40S RIBOSOMAL PROTEIN SA 3 289 IPR005707 GO:0003735|GO:0006412|GO:0015935
Eupl09g00679 320 Gene3D - 13 217 - -
Eupl09g00679 320 PRINTS Ribosomal protein S2 signature 44 53 IPR001865 GO:0003735|GO:0005840|GO:0006412
Eupl09g00679 320 PRINTS Ribosomal protein S2 signature 156 170 IPR001865 GO:0003735|GO:0005840|GO:0006412
Eupl09g00679 320 PRINTS Ribosomal protein S2 signature 135 146 IPR001865 GO:0003735|GO:0005840|GO:0006412
Eupl09g00679 320 PRINTS Ribosomal protein S2 signature 14 32 IPR001865 GO:0003735|GO:0005840|GO:0006412
Eupl09g00679 320 PRINTS Ribosomal protein S2 signature 93 110 IPR001865 GO:0003735|GO:0005840|GO:0006412
Eupl09g00679 320 PRINTS Ribosomal protein S2 signature 118 135 IPR001865 GO:0003735|GO:0005840|GO:0006412
Eupl09g00679 320 ProSitePatterns Ribosomal protein S2 signature 2. 118 142 IPR018130 GO:0003735|GO:0005840|GO:0006412
Eupl09g00679 320 FunFam 40S ribosomal protein SA 13 219 - -
Eupl09g00679 320 CDD RPS2 17 183 IPR001865 GO:0003735|GO:0005840|GO:0006412
Eupl09g00679 320 Hamap 40S ribosomal protein SA [rps-0]. 4 252 IPR027498 GO:0003735|GO:0006412|GO:0015935
Eupl09g00679 320 MobiDBLite consensus disorder prediction 273 293 - -
Eupl09g00679 320 NCBIfam 30S ribosomal protein S2 9 205 IPR005707 GO:0003735|GO:0006412|GO:0015935
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl09g00679 Eupl-Chr9 15602998 15606790 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl09g00679 1 276 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 74.113 7.59e-153 428
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl09g00679 K02998 - nnu:104600469 501.901