Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl09g00643 ATGATGAAGGCTCCGTCTAACGGGTTTTCGGCAAATTCAGGAGAAGGTGAAAGAAGGAGCATCAATTCAGAGTTATGGCATGCTTGTGCGGGACCGCTGGTGTCTTTGCCTCCAGTGGGTAGTCTTGTGGTTTACTTCCCACAAGGCCACAGTGAACAGGTTGCAGCTTCGATGCAAAAGGATACTGATAGCATCCCAAGCTATCCCAGCCTTCCTTCAAAGTTGATTTGCGTCCTTCATAATGTCACTTTACATTATGATAAGGAAGCATTACTGGCATCTGATATGGGCCTCAAGCAAAATAAGCAACCAGCTGAGTTCTTCTGCAAGACACTTACGGCCAGTGACACAAGCACTCATGGTGGATTTTCTGTTCCCCGTCGCGCGGCTGAAAAGATTTTCCCACCTTTAGATTTTTCGATGCAACCCCCTGCTCAGGAGCTAGTAGCAAGAGACTTGCATGATGTGGCATGGACATTCAGACATATCTATCGTGGTCAACCTAAAAGGCACCTGCTGACTACAGGTTGGAGTGTGTTTGTTAGCACGAAAAGACTCTTTGCTGGCGATTCAGTCCTTTTTATAAGAGATGAGAAGTCACAGCTCCTCTTGGGTATAAGACATGCTAATAGACAGCAGCCACCACTCTCTTCATCCGTCATATCCAGTGATAGCATGCATATTGGAATTCTTGCTGCCGCTGCTCATGCTGCCGCAAGTAATAGCCCATTTACTATATTTTACAACCCAAGGGCCAGCCCATCAGAGTTTGTGATTCCCCTAGCCAAGTATAATAAAGCTATGTACACCCATGTTTCCCTTGGCATGCGATTTAGGATGATGTTTGAGACCGAGGAGTCTGGAGTACGCAGATATATGGGCACAATCACAGGTACCAGTGATCTGGATCCGGTGAGATGGAAAAGTTCACAGTGGCGCAATCTTCAGGTTGGGTGGGATGAATCGACAGCCGGTGAACGGCCAAGCCGTGTTTCAATTTGGGAGATTGAGCCTGTCATAACTCCTTTCTACATATGTCCACCCCCATTTTTCAGACCCAAGTTCCCCAAGCAACCAGGGGTGCCAGATGACGAGTCTGACATAGAGAACGCATTCAAGAGGGCAATGCCCTGGCTTGGAGATGACCTTGGCATCAGGGATGCTCAAAGCCCAATCTTCCCGGGCTTGAGTCTCGTCCAGTGGATGAGCATGCAGAACCCTCAGTTCTCAGCCGCTCAGTCGGGATTATTCCCATCCACGGTTTCCTCGGCTACCTTGCACAATAACCTTAGCACAGATGACTCATCTAAGATACTGAACTTCCAATCCCATGCCTTGGCTGGGCCGAATTTCCAGTTTAACGTTCCCAAAACAAATCAACAGAACCAACTAGTTGACCAGTTTCAGCAATCGCCTCTCACGTGGCCCCAGCAACAGGCTTTTATTGATCCAACACAGCAGCATCAAAACTCGCAACAACAGCAGCAGCAACAACAACAGCAGCAGCAGCATCATCAACAGCAGCTGCAACACCACCACCACCACCAACAACAGCAGCAGCAACAACAACAACAGCAACAACAACAGCAGCAGCAACAACAACAACAGCAGCAGCAGCAGCAGCTACTACGACCAGCTCATATTAATAATGGTGTAGTTGCTCCAACCCAGATTTCGAGCCAAAATTTGCAACAACCAATCGTCTTTTCTCAGCTTCAGCAACAGCCACTACCCACACCTAACATCCACTCCCAGCAAAACCTACATCCCCTCCAAGCAGCATCATTGCCACAAGAGTTGCAGTTCCAGCGACAAGTGGAACAGCAACTGAGCCTCTCACAGAGGCAGCAGCAGCAGCCACAGCAGCAACAGTTCCCACTATCCCAGCATCAGCTTCAGCTACAGTTGCTGCAAAAGTTGCAGCAACAGCAACAGCAACAGCAACAGCAACAGTTACTCTCTCAGGTTAGCCCACGTTTGCAGCCTCAGCTACCACAGCAACAGCAGGCACATCAACAAAATCAGCAATTTCAACAACAGCATCATCATCATCATCATCAGCAGCAACTTAACACCCCCACCAATTTTTCTCCATCTCCACTAAACCAACCACAACAGTTTCCCTCAAACCATCTTCTGGGACAGCACAAGCCACCCATGCCCATCAGAGCTCATTCTGGTCTCACCGATGGGGATGCTCCATCATGTTCAACCTCACCTTCTACTCATAACTGCCAGGTACCTCTGTCGAGCTTCTTGAACGGAACCCATCAAGGTCCAGCAATATTGGTAGATGACACGGTGGTTCAATCTGCAAGTAATTTGGTTCAAGAGCTTCATAGCAAATCTGATGTCCGAATCAAACATGAATTGCCCAATTCAAAAGAACCAAACCAACCAGTATACAGAGGTGCCATTACCGATGCATTGGAAGCATCCTCGTCTGCAACCTCATATTGTATGGATGGTGGTAGCCTCCAGCAAAATTTCTCGCTACCTAACTTCTGTTTGGATGGGGAAGTTCTGGTGGATCCTCCAAACAATCTTCTCTTCGGAGTTAATATTGATGGTTTGACACCAGACACTTTGTTGTCGAGGAGGTTTGGCTCTGGGAAGGATCTTCAAAACTTGCTTTCTAGTTATGGTGGTACTCAGAGAGATATTGAGACGGAGTTATCTACTGCTGCAATCAGTTCTCAGTCATTTGGGGTGCCAGATATGTCGTTCAAGCCTGGTTGTTCCAGTGAAGCTGCCATCAACGAGAGTGGGGTTTTGAATAAGGGCTTGTGGCCTAGTCAGACGCCTCAGCGTATGCGGACATTTACGAAGGTTCAAAAGCGAGGCTCTGTGGGACGATCTATAGACGTCACCCGTTACAAGGGGTATGATGAGCTCAGGCATGATCTAGCACGCATGTTTGGAATCGAAGGGCAGCTAGAAGATCCACTCAAGATGGAGTGGAAACTAGTTTATGTGGATCACGAAAATGACATTCTACTCGTCGGAGATGACCCCTGGGAGGAGTTTGTAAGTTGTGTACAGAGCATCAAGGTACTGTCGTCAGCTGAAGTTCAACAGTTGAGTTTGGATGGGGATCTAGGAAATGCGCAAATACACAAGCAGGCCTGCAGTGGGTCTGGTAGTGGGAATGTGTGGAAGGGACACTATGACGATGATTCAGTGGCCTCTTTGAGCGGTGAGAGTGGGCTGGGGTGA 3216 0.4813 MMKAPSNGFSANSGEGERRSINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKDTDSIPSYPSLPSKLICVLHNVTLHYDKEALLASDMGLKQNKQPAEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELVARDLHDVAWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKSQLLLGIRHANRQQPPLSSSVISSDSMHIGILAAAAHAAASNSPFTIFYNPRASPSEFVIPLAKYNKAMYTHVSLGMRFRMMFETEESGVRRYMGTITGTSDLDPVRWKSSQWRNLQVGWDESTAGERPSRVSIWEIEPVITPFYICPPPFFRPKFPKQPGVPDDESDIENAFKRAMPWLGDDLGIRDAQSPIFPGLSLVQWMSMQNPQFSAAQSGLFPSTVSSATLHNNLSTDDSSKILNFQSHALAGPNFQFNVPKTNQQNQLVDQFQQSPLTWPQQQAFIDPTQQHQNSQQQQQQQQQQQQHHQQQLQHHHHHQQQQQQQQQQQQQQQQQQQQQQQQQQLLRPAHINNGVVAPTQISSQNLQQPIVFSQLQQQPLPTPNIHSQQNLHPLQAASLPQELQFQRQVEQQLSLSQRQQQQPQQQQFPLSQHQLQLQLLQKLQQQQQQQQQQQLLSQVSPRLQPQLPQQQQAHQQNQQFQQQHHHHHHQQQLNTPTNFSPSPLNQPQQFPSNHLLGQHKPPMPIRAHSGLTDGDAPSCSTSPSTHNCQVPLSSFLNGTHQGPAILVDDTVVQSASNLVQELHSKSDVRIKHELPNSKEPNQPVYRGAITDALEASSSATSYCMDGGSLQQNFSLPNFCLDGEVLVDPPNNLLFGVNIDGLTPDTLLSRRFGSGKDLQNLLSSYGGTQRDIETELSTAAISSQSFGVPDMSFKPGCSSEAAINESGVLNKGLWPSQTPQRMRTFTKVQKRGSVGRSIDVTRYKGYDELRHDLARMFGIEGQLEDPLKMEWKLVYVDHENDILLVGDDPWEEFVSCVQSIKVLSSAEVQQLSLDGDLGNAQIHKQACSGSGSGNVWKGHYDDDSVASLSGESGLG* 1072
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl09g00643 1071 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 540 IPR044835 GO:0003677|GO:0006355|GO:0009725
Eupl09g00643 1071 SUPERFAMILY DNA-binding pseudobarrel domain 98 237 IPR015300 -
Eupl09g00643 1071 Coils Coil 514 541 - -
Eupl09g00643 1071 MobiDBLite consensus disorder prediction 660 743 - -
Eupl09g00643 1071 Gene3D - 271 341 - -
Eupl09g00643 1071 MobiDBLite consensus disorder prediction 484 506 - -
Eupl09g00643 1071 Pfam B3 DNA binding domain 108 208 IPR003340 GO:0003677
Eupl09g00643 1071 FunFam Auxin response factor 106 210 - -
Eupl09g00643 1071 CDD B3_DNA 107 207 IPR003340 GO:0003677
Eupl09g00643 1071 MobiDBLite consensus disorder prediction 689 712 - -
Eupl09g00643 1071 MobiDBLite consensus disorder prediction 660 677 - -
Eupl09g00643 1071 FunFam Auxin response factor 271 343 - -
Eupl09g00643 1071 ProSiteProfiles B3 DNA-binding domain profile. 108 210 IPR003340 GO:0003677
Eupl09g00643 1071 Coils Coil 627 650 - -
Eupl09g00643 1071 SUPERFAMILY CAD & PB1 domains 955 1017 - -
Eupl09g00643 1071 Gene3D - 106 209 IPR015300 -
Eupl09g00643 1071 Gene3D - 934 1028 - -
Eupl09g00643 1071 FunFam Auxin response factor 934 1028 - -
Eupl09g00643 1071 Pfam Auxin response factor 234 316 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Eupl09g00643 1071 SMART B3_2 108 210 IPR003340 GO:0003677
Eupl09g00643 1071 ProSiteProfiles PB1 domain profile. 939 1032 IPR000270 GO:0005515
Eupl09g00643 1071 Pfam AUX/IAA family 936 1027 IPR033389 -
Eupl09g00643 1071 MobiDBLite consensus disorder prediction 484 524 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl09g00643 Eupl-Chr9 15123592 15135652 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl09g00643 2 472 B3 DNA Binding Superfamily AT1G19220 77.189 0.0 766
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Eupl09g00643 AUX_IAA 2.6e-09 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl09g00643 K14486 - nnu:104600495 825.854