Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Eupl09g00642 | ATGGCGACAATACAGTGCACTGGTTCATCTATTGGGACCAGAAGCTTGCCCCCATTTGAAGGCCTTCGCTCATCAACGGTCAGGAATTCTTCACTCACACCATCCAGCGTAGTGCCCAGCCAGAGGATGTTCCGAGGACTCGTTGTGAAAGCAGCCACTGTTGTTGCGCCAAAGTACACTTCCATCAAGCCCATGGGCGATAGAGTTCTAGTGAAGGTCAAGAGTGTGGAGGAGAAAACAATAGGTGGTATATTGCTTCCTACACCAGCCCAGGCAAAGCCACAAGGAGGTGAAGTCGTAGCAGTTGGAGAGGGTAAGACTATTGGGAAGAACAAAGTGGACATCACTGTGCAGACGGGTACCCAAATCGTGTTCTCGAAGTATGCGGGGACGGAGCTGGAGTTCAATGGATCAAATCATATTCTGTTGAAGGAGGATGACATTGTGGGTATTCTTGAGACAGATGATATCAAGGATCTCAAACCTCTGAACGATCGTGTTTTAATCAAGGTTGCTGAAGCTGAGGAGAAGACTGATACTGGCTTGTATCTGATGAGTGCAGCCAAGGAGAAACCTTCAATTGGGACGGTGATTGCCGTTGGGCCTGGTCCTCTGGATGGCGAAGGCAGCAGTAAGCCACTGACAGTCTCCCCAGGGAACACAATCTTGTACTCCAAATTTGCAGGAAACGACTTCAAGGGCAGTGACGGTGACTACATAGCTCTTAGGGCGTCTGATGTAATGGCTGTGATGTCTTAG | 759 | 0.4928 | MATIQCTGSSIGTRSLPPFEGLRSSTVRNSSLTPSSVVPSQRMFRGLVVKAATVVAPKYTSIKPMGDRVLVKVKSVEEKTIGGILLPTPAQAKPQGGEVVAVGEGKTIGKNKVDITVQTGTQIVFSKYAGTELEFNGSNHILLKEDDIVGILETDDIKDLKPLNDRVLIKVAEAEEKTDTGLYLMSAAKEKPSIGTVIAVGPGPLDGEGSSKPLTVSPGNTILYSKFAGNDFKGSDGDYIALRASDVMAVMS* | 253 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Eupl09g00642 | 252 | CDD | cpn10 | 160 | 250 | IPR020818 | GO:0005524|GO:0006457|GO:0044183 | |
| Eupl09g00642 | 252 | Hamap | Co-chaperonin GroES [groES]. | 159 | 252 | IPR020818 | GO:0005524|GO:0006457|GO:0044183 | |
| Eupl09g00642 | 252 | PANTHER | 10 KDA HEAT SHOCK PROTEIN | 158 | 250 | IPR020818 | GO:0005524|GO:0006457|GO:0044183 | |
| Eupl09g00642 | 252 | CDD | cpn10 | 61 | 152 | IPR020818 | GO:0005524|GO:0006457|GO:0044183 | |
| Eupl09g00642 | 252 | FunFam | 20 kDa chaperonin, chloroplastic | 55 | 154 | - | - | |
| Eupl09g00642 | 252 | SUPERFAMILY | GroES-like | 158 | 251 | IPR011032 | - | |
| Eupl09g00642 | 252 | Pfam | Chaperonin 10 Kd subunit | 160 | 250 | IPR020818 | GO:0005524|GO:0006457|GO:0044183 | |
| Eupl09g00642 | 252 | Pfam | Chaperonin 10 Kd subunit | 62 | 151 | IPR020818 | GO:0005524|GO:0006457|GO:0044183 | |
| Eupl09g00642 | 252 | SUPERFAMILY | GroES-like | 60 | 153 | IPR011032 | - | |
| Eupl09g00642 | 252 | SMART | Cpn10_2 | 61 | 152 | IPR020818 | GO:0005524|GO:0006457|GO:0044183 | |
| Eupl09g00642 | 252 | SMART | Cpn10_2 | 159 | 251 | IPR020818 | GO:0005524|GO:0006457|GO:0044183 | |
| Eupl09g00642 | 252 | PRINTS | 10kDa chaperonin signature | 182 | 203 | IPR020818 | GO:0005524|GO:0006457|GO:0044183 | |
| Eupl09g00642 | 252 | PRINTS | 10kDa chaperonin signature | 238 | 251 | IPR020818 | GO:0005524|GO:0006457|GO:0044183 | |
| Eupl09g00642 | 252 | PRINTS | 10kDa chaperonin signature | 160 | 175 | IPR020818 | GO:0005524|GO:0006457|GO:0044183 | |
| Eupl09g00642 | 252 | PRINTS | 10kDa chaperonin signature | 217 | 229 | IPR020818 | GO:0005524|GO:0006457|GO:0044183 | |
| Eupl09g00642 | 252 | Hamap | Co-chaperonin GroES [groES]. | 61 | 153 | IPR020818 | GO:0005524|GO:0006457|GO:0044183 | |
| Eupl09g00642 | 252 | Gene3D | GroES chaperonin | 54 | 154 | IPR037124 | GO:0006457 | |
| Eupl09g00642 | 252 | Gene3D | GroES chaperonin | 155 | 252 | IPR037124 | GO:0006457 | |
| Eupl09g00642 | 252 | PIRSF | Cpn21 | 1 | 252 | IPR017416 | GO:0006457|GO:0046914|GO:1901671 | |
| Eupl09g00642 | 252 | FunFam | 10 kDa chaperonin | 158 | 252 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Eupl09g00642 | Eupl-Chr9 | 15118711 | 15122809 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Eupl09g00642 | 1 | 252 | Calmodulin-binding Proteins | AT5G20720 | 71.765 | 1.48e-125 | 355 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Eupl09g00642 | K04078 | - | msin:131251761 | 399.823 |