Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl09g00636 ATGCAGCAGCAGAGGCTGAAGCAGCAACAACAGGCCTTGATGCAACAAGCTCTCCTTCAGCAACAACAGCAATCCCTCTATCATCCTGGCCTCTTAGCTCCTCCTCAGATAGAGCCGATTCCAAGTGGAAATCTGCCTCCTGGGTTTGATTCAAGTACATGCCGCAGTGTGTATGTTGGTAACATTCATACACAGGTAACAGAACCACTTCTTCAAGAGGTTTTCTCGAGTACTGGTCCGCTTGAAGGATGCAAGCTCATTAGGAAAGAGAAGTCATCCTATGGTTTTGTCGACTACTTCGATCGCAGATCAGCTGCTCTTGCTATTTTGACTCTTAATGGGAGGCATCTGTTTGGTCAGCCTATTAAAGTTAATTGGGCCTATGCCAGTGGTCAGAGGGAAGACACATCAGGTCATTTCAACATTTTTGTTGGTGATCTTAGCCCCGAGGTTACAGATGCTACCTTGTTCGCCTGCTTCTCTGTTTATCCCAGTTGTTCAGATGCAAGGGTTATGTGGGATCAAAAGACTGGACGTTCAAGAGGGTTTGGGTTTGTTTCTTTTAGGAATCAACAGGAGGCCCAAAGTGCGATAAATGATTTAACTGGAAAGTGGCTTGGCAGTAGACAGATACGATGTAACTGGGCAGCAAAAGGTGCTGGTGCCAATGAGGACAAGCAAAGCTCGGATGCTAAAAGCGTGGTGGAGCTGACAAATGGAACATCAGAAGATGGGCAAGAGACCACAAATGATGATGCTCCCGAGAATAACCCTCAGTATACCACTGTTTATGTGGGCAACCTTGCTCCAGAGGTTACCCAGCTTGATCTCCACCGGCATTTCCATACCCTTGGTGCTGGAGTAATTGAAGAAGTCCGGGTGCAACGAGATAAAGGCTTTGGTTTCGTGAGATACAGTACCCATGCAGAAGCAGCGCTAGCTATTCAGATGGGCAATGCCCGAATTCTTTATGGCAAGCCAATTAAGTGCTCATGGGGTAGCAAACCCACTCCACCAGGAACGAGTTCAACCCCTCTCCCCCCACCCACTGCTGCACCGTATCCAGGTCTTTCAGCCACTGACCTCTTGGCCTACGAGCGACAGCTGGCAATGAGCAAGATGGGAGGGGGCCAGGCCCTGATGCACCCCCAAGGTCAGCATGCTCTCAAGCAGGCAGGCATGGGAATGGGTGGAGCTGGAGCAAGCCAGGCAATCTACGATGGTGGATTCCAGAACATTGCTGCAGCCCAGCAGCTCATGTATTACCAGTAA 1272 0.4945 MQQQRLKQQQQALMQQALLQQQQQSLYHPGLLAPPQIEPIPSGNLPPGFDSSTCRSVYVGNIHTQVTEPLLQEVFSSTGPLEGCKLIRKEKSSYGFVDYFDRRSAALAILTLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQEAQSAINDLTGKWLGSRQIRCNWAAKGAGANEDKQSSDAKSVVELTNGTSEDGQETTNDDAPENNPQYTTVYVGNLAPEVTQLDLHRHFHTLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNARILYGKPIKCSWGSKPTPPGTSSTPLPPPTAAPYPGLSATDLLAYERQLAMSKMGGGQALMHPQGQHALKQAGMGMGGAGASQAIYDGGFQNIAAAQQLMYYQ* 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl09g00636 423 CDD RRM1_PUB1 57 127 - -
Eupl09g00636 423 Gene3D - 138 232 IPR012677 -
Eupl09g00636 423 Gene3D - 1 137 IPR012677 -
Eupl09g00636 423 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 55 129 IPR000504 GO:0003723
Eupl09g00636 423 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 140 218 IPR000504 GO:0003723
Eupl09g00636 423 MobiDBLite consensus disorder prediction 226 260 - -
Eupl09g00636 423 Gene3D - 235 340 IPR012677 -
Eupl09g00636 423 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 261 335 IPR000504 GO:0003723
Eupl09g00636 423 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 142 212 IPR000504 GO:0003723
Eupl09g00636 423 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 57 123 IPR000504 GO:0003723
Eupl09g00636 423 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 263 329 IPR000504 GO:0003723
Eupl09g00636 423 SMART rrm1_1 141 214 IPR000504 GO:0003723
Eupl09g00636 423 SMART rrm1_1 262 331 IPR000504 GO:0003723
Eupl09g00636 423 SMART rrm1_1 56 125 IPR000504 GO:0003723
Eupl09g00636 423 FunFam oligouridylate-binding protein 1-like isoform X2 138 233 - -
Eupl09g00636 423 FunFam Oligouridylate-binding protein 1C 238 339 - -
Eupl09g00636 423 SUPERFAMILY RNA-binding domain, RBD 54 218 IPR035979 GO:0003676
Eupl09g00636 423 FunFam oligouridylate-binding protein 1B-like isoform X2 1 137 - -
Eupl09g00636 423 CDD RRM2_PUB1 139 218 - -
Eupl09g00636 423 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 46 338 - -
Eupl09g00636 423 MobiDBLite consensus disorder prediction 334 353 - -
Eupl09g00636 423 MobiDBLite consensus disorder prediction 222 260 - -
Eupl09g00636 423 SUPERFAMILY RNA-binding domain, RBD 252 340 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl09g00636 Eupl-Chr9 14979262 14986745 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl09g00636 56 329 Eukaryotic Initiation Factors Gene Family AT3G16380 27.491 3.81e-20 90.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl09g00636 K13201 - nnu:104600504 731.865